Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2343 ATGACGAATCAGCTGACTAGTGGAAACCGAAGGCGGGACTGCACAAACAACCATAAGCGGAAGAAGCATAGGATAATCCAATCAGCTGAGGAGGAGATTGATTCAAAGTTTGGATTCAATCTCTTCTCTGAAGGCGACAAGAGGCTTGGATGGTTGCTCACTTTCACTCCTTCATCTTGTAAGGACGAGGATACTGAAAAAATCTACAGCTGTATCAATCTTTATTTTGTCACACAGGATGGCAGCAGTTTCAAATCAAAATATAAGTTTCGTCCTTACTTTTATGCAGCCACAAAGGATAAAATGGAAACTGATGTGGAGGCTTTTTTGAGACTACGTTATAAAGGTCAAATAGCTGATATTGAGATTTTAGAGAAAGAAGACCTTGATCTTAAGAATCATCTATCGGGCTTGCGTAAGGCATATTTAAAGCTATCATTTGACACTGTTCAAGAATTGCTGAATGTAAAGAGTGAACTACTGCATGTTGTTGAAAGCAATTGGGAGAAGTCTGATGCCGCCGAAGCATATGATTCTATTTTATTTGGGAAAAGAGAACAGAGGCCTCAAGATTTTCTAGAATGTATTGTTGATCTTCGAGAGTACGATGTTCCTTACCACGTTCGCTTTGCTATTGATAATGCCGATCTTCAACTTGCTTTTGAGCCATACTTCGTGTTCTCCCCAGGATTTCACGTGCTCGGATACCAAATTGTTAGGAAATGTAGTAGGGTCAGGCGGTTGTCCCATTTGCGCTGTGGACAGTGGTATGATGTCAGTGTATCAAGCACTGGTATTACACTTGAGAAGAGAAAAGATCTTTTGCAACGTGCTGAAGTTCGGATATGTGCATTCGATATTGAGACCACAAAACTACCATTGAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAATACACTCCAAAACCAGAATATGAAGGGTTCTTCAAAGTGACTAATGTGAAAAATGAGTTAGAGCTTCTCAAACTGTGGTTTGCCCATATGCGAGAGGTGAAACCTGGTATCTACGTCACCTACAATGGCGACTATTTTGACTGGCCATTCCTTGAAAGCAGAGCAGCATATCATGGATTTAAAATGAGTGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGGGAGTGTCGTTCAAAATTTGCTTGTCATCTGGATTGTTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAGGGTAGCCATGGTTTGAAGGCTGTCACAAAAGCAAAATTGGGTTATGATCCTCTTGAAGTGAATCCAGAAGATATGGTGCGGTTTGCAAAGGAAAAGCCTCAGATGATGGCTTCCTATTCCGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACATATGTTCATCCTTTCATTTTTTCTCTAGCAACTATCATTCCAATGTCACCGGATGAGGTGTTGCGCAAGGGAAGTGGGACACTTTGTGAAATGCTTTTAATGGTTCAGGCTTATGAGGCTAATGTCGTGTGTCCTAACAAACATCAATCGGATCCAGAGAAGTTCTATAACAATCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGTCTAGAGAGTGGTGTATTTAGATCTGACCTTCCCACCAGTTTTAGGCTTGATTCATCTGCTTATGATCATTTGATAAACAATCTAGATCGCGATTTGCAGTATGCCATTCAAGTAGAAGGAAAGATGGAATTGGAACTGGTGTCAAACTATAGTGATGTGAAGAATGCTATTATGGGAAAGCTTATTAGATTGCGGGATGAGCCTGTGCGTGAAGAGTGCCCACTGATCTACCACCTTGATGTAGCTGCAATCGACTATTATCATCTGAAGAGGCAAATTGAGTCTGAGTTTGTCGACGGTGGTAACATTCGGTTGTCAAAACCATTTCTTGAACTTCCGAAGTTGGAGCAACAAGCAAAACTCAAAGAGCGTTTAAAGAAATACTGTCAGAAGGCTTACAAACGGGTACTTGATAAGCCAGTCACTGAAGTTCGAGAAGCAGGGATCTGTATGAGAGAAAACTCCTTCTATATAGACACTGTTCGTAGTTTTCGAGACAGAAGGTATGAATACAAAGGGCTCAATAAAGTATGGAAGGGAAAACTATCAGAAGCTAAAGCGAGTGGAAACTCAATCAAGATCCAGGAAGCCCAAGACATGGTAGTTCTCTATGATTCATTGCAACTTGCTCATAAATGTATCCTCAACTCTTTTTATGGATATGTGATGCGAAAGGGTGCTCGTTGGTATTCAATGGAAATGGCTGGGGTTGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCGTCTGCTGATTGAGAAAATTGGAAAACCACTAGAGTTAGACACTGATGGTATTTGGTGTGCACTACCTGGATCATTCCCAGAGAACTTTACCTTTAAAACAAAAGATTCGAAGAAGTTGACAATTTCATATCCATGTGTTATGCTTAATGTTGATGTGGCAAGGAACAATACAAATGACCAATACCAGACACTTGTAGATCCTGTGAGGAAAATATATGAAACACGTAGTGAATGCTCAATTGAATTCGAAGTGGATGGACCATACAAGGCAATGATCCTTCCTGCCTCCAAGGAGGAAGGCATTTTGATCAAGAAGAGGTATGCTGTCTTCAATCATGATGGAACCCTTGCAGAGCTTAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTTCATGGTTCCACCTTAGAGGAATGCTATTCAGTCGTTGCATCTGTTGCAAATCGCTGGCTCGATCTTCTAGATAGTCAAGGAAAAGATATTGCAGATAGTGAGTTACTTGATTATATATCTGAATCCAGTACCATGAGCAAGTCTTTGGCAGACTATGGCGAGCAAAAATCTTGTGCTGTTACCACTGCGAGACGTCTTGCTGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTACGTTGTCAATATATAGTTGCATGTGAACCCAAGGGGACACCCGTAAGTGAGCGAGCTGTTCCTGTTGCTATATTCGAGACTGATCTAGAGATAATGAAATTTTATGTACGCAAATGGTGCAAAATTTCATCAGAAGTTGGTATTCGATACATCATTGACTGGTCCTACTACAAACAACGCCTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCTGCCATGCAAAAGGTTTCAAATCCTGTCCCTAGGGTGGTCCATCCTGATTGGTTACATAAGAAAGTTCGTGAGAAGGATGATAAATTTCGCCAACAGAAAATAGTTGATATGTTTGCCTCCTCAAGCAGAGGTAAATGTTCAGCAAACAATGGTGGTGCTAGCAGCAGCAAACTTGTGATGAATGGCGAAAATTCTGAGGACTTAGAAGACTTTCAAAATAAAACGAGTTCTACAAATGGCCCCAGACCAGTTGCTCGATGTTACAACATTAGAGCCATGAAACATTCAATCACAAGAGATAGCCAAGTTGATTCTGTGATGCAGGAAAATTTTAATGGTGGAGGATGTGAGCCTTCTTCACCATTGCATTTTGAAGACATTGACAGAAATGTGGATTACCAAGGATGGCTTGAAATGAAGAAGCGAAAGTGGAAGGATACTTTGGACAAGAGGAAGAAACAAAGATTGATAGATTTAAGGACTCCACTTCCTGTTAATGGTGTTTCACGGGATTTAAATTGTGGTATGAATGATAAAGAGGCTGCTGGAATAACAGGTGTTGGTTCATATTTCAAGAGGCATGATAATTCTATAACACGCTGCCATTGGCAGATTTTACAGCTAGTTCATAGTTCACAGAGTGACCAATATTTTGCTTGGGCTGTTGTTGAAGGAGTTATGCTAAAGATTCCTATTACTGTTCCTAGAGTATTTTACCTTAATTCTAAAGTACCCATTACAGAAGAATTTGTGGGTAGGCGTGTTAACAAAACCCTTCCCCATGGAAGGCACACCTATAACCTGTATGAGGTTGTGACTGATGAAAGTCAGTTTAGGACACAGAGTAATAAACTTGCTGCTCTCCTTGCAGATCCAGAAGTTGAGGGAATCTATGAAAGTAAGGTACCATTGGACTTCAAGTCCATCCTCCAGATTGGCTGTGTCTGTAAAGTTGCCAAAGATGCTAAAAAACGAAACCTTCAAGATGGGTGGAGTCTGGATGAACTGCAAATGAAGACTACAACAGAATGCAGCTATCTGGAAAAGCCAATCCCTTTCTTCTATGTGTACAATAGCATTTCTAAAGGAGGAGCTATCTACATTACTTATTTTCCTGCCACAAAATCCATACTTGTGGTGGTGGTTAGTTCTTACCGAAACAAAGACTTGTCATCAAATTTTCTTGAAAGGAAATTTTGTGAAGCTTGTGGTCAGTCACAACCTTCTAAAAGTGGTATAACTTACAAGGTTGACTATGTTGTTAGCATCAAAGAAGCTGAAGTGATTTTGCAAAAATCAATAACAGAGCACAGGAGCATAAAACGTGGACCTATTGTAGCTATAATTCAATCCCCAAATGTGCAGCTGCTGAAGTCAGCTGTGAAAGCATTAGATGATTTTCCGTGCGCGAACATACCTTATAATGCTTGTGATAGCCAATCTGAGTTTCTTGGTTGGCAACAAAAAGCTGCTCAGATTGGAATGCAACGGTGTGCCGCATCATCCCAATGGTTCAATGATAGGATCTCTCTTGCAAGATATGCCCATGTACCGTTAGGAAATTTTGGACTTGATTGGACAATTTTTACAGCAGATATTTTCTTTTCAAGGGCATTACATGATCAACAACAGGTCCTTTGGATATCAGATGACGGTGTTCCAGATATAGGAGGCAATAATATTGAAGACGTTTGTTTTGTCGATGAGGTCCAACAACCTTTTCTGAATTGCTGTGGAGCATACAGAAAAATTTCTGTGGAGCTGAAGATCCATCATTTGGTTGTCAATGCTTTGCTGAAGAGCAACCAATTGAATGAAATGGAAGGAGGTGGCTTTGACGAGGCTGCATCAAATGCCCCAGCATTTCTTGTCTTGAAACAATTGATTCAAAGGTGTCTTGTAGATGCAGTTACATCTGGAAATGAATATGCCGATGAAATTTTGCAACATCTGTACCGTTGGATTTGCAGGTTTCTGCTTATCTTCTTGATTCTATCTGAAGCTCAAACTTGGCTTGTTGACTATGTTGATTCATTTTTGCTTTTGCATTGCAGCCCCCAATCAAGGCTTCACGACCCAGCTCTTCATCGCTTGCTTCACAAGGCAATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGCACTACGCAAATTAGGTGCCACCATTATTTTTGCAAACTTCTCAAAAGTCATCATAGACACGGGAAGGTTTGATGTTTCTGTTGCTAAAGCATACTGTGACAGCTTGCTGAAAACTCTGCAAACAAGGGACCTGTTTGAGTGGATTGAGCTGAAACCGGTACAGTTCTGGCACTCGCTGTTATTTATGGATCAGTACAACTATGGTGGAATTCCAGTAAAAGATGGTGAATCTCAAGTTGAAATATTGCGCAACTGGAACATTGCGGAATATCTACCTAAGAAGATTCAGGATTCTTTTATTAGGATCGTTTGTCAATATTTATACATTCCATGGAAATATGCAACCAAGCTAGCTGGAGCAAGAGCATCGTTGCAGCGGGGCGACGACACGTGTAACCCATCTGTTGAATCGTTAGAATCACACATGACAGAACATCTCAAAGAACAGTTGAGTTCATACTTCAGCAACAAACTATTTGAAATTGTTCGTGATATTTTACTAAAACAACCTCGTGGTAGTGTCCATAAAGGAGATGCTGCATTGGAATTCATTAAGTACGTTTGTGCTGCATTGGATCTCGACCAAAATGTCCGAGATGATGTTCGGAAAATCAAGAAGAATTTACTGAAGTTTGTGCATGTAAGAGAGTTTGCACCAGAAGCTGAGTTTTCCAATCCTTGCACTCCCTTCATCTTACCCAATGTCTTTTGCAGCTCTTGTAATGACTGTCGAGATTTGGACTTGTGTCGAGATTTGGACTTGTGTCGAGATTTGGACTTGTCCAGTGACTCACCTTTAGAAGAACAAAAATGGTATTGTGCTGTGCCAGGATGTGAACAACCATACGACCAAGAAATGATAGAGAATGCTCTGATTCAAATTGTGATGCAGAGAGAGCGTGCATATCACGTGCAGGATTTGGTATGCGGTCGGTGCAAGCAGGTTAAAGCTGCTCATTTGTGGGAACAATGTGCCTGTGCTGGCACATTCCACTGCAAAGAAGATGAGAAGGAATTTTCCAGCAAGATGAGGATTCTCTTGGATGTTGCCATTCGTCAAAAGTTTGAACTACTCCAAGAGCTCATCTCATGGATCTTGGCAAATGGGTCGAAATCAAAATCTGTTATCATCTCAATATAG 6594 40.6 MTNQLTSGNRRRDCTNNHKRKKHRIIQSAEEEIDSKFGFNLFSEGDKRLGWLLTFTPSSCKDEDTEKIYSCINLYFVTQDGSSFKSKYKFRPYFYAATKDKMETDVEAFLRLRYKGQIADIEILEKEDLDLKNHLSGLRKAYLKLSFDTVQELLNVKSELLHVVESNWEKSDAAEAYDSILFGKREQRPQDFLECIVDLREYDVPYHVRFAIDNADLQLAFEPYFVFSPGFHVLGYQIVRKCSRVRRLSHLRCGQWYDVSVSSTGITLEKRKDLLQRAEVRICAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGFFKVTNVKNELELLKLWFAHMREVKPGIYVTYNGDYFDWPFLESRAAYHGFKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYEANVVCPNKHQSDPEKFYNNRLLESETYIGGHVECLESGVFRSDLPTSFRLDSSAYDHLINNLDRDLQYAIQVEGKMELELVSNYSDVKNAIMGKLIRLRDEPVREECPLIYHLDVAAIDYYHLKRQIESEFVDGGNIRLSKPFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVTEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVRKIYETRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNHDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDSQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDLEIMKFYVRKWCKISSEVGIRYIIDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLHKKVREKDDKFRQQKIVDMFASSSRGKCSANNGGASSSKLVMNGENSEDLEDFQNKTSSTNGPRPVARCYNIRAMKHSITRDSQVDSVMQENFNGGGCEPSSPLHFEDIDRNVDYQGWLEMKKRKWKDTLDKRKKQRLIDLRTPLPVNGVSRDLNCGMNDKEAAGITGVGSYFKRHDNSITRCHWQILQLVHSSQSDQYFAWAVVEGVMLKIPITVPRVFYLNSKVPITEEFVGRRVNKTLPHGRHTYNLYEVVTDESQFRTQSNKLAALLADPEVEGIYESKVPLDFKSILQIGCVCKVAKDAKKRNLQDGWSLDELQMKTTTECSYLEKPIPFFYVYNSISKGGAIYITYFPATKSILVVVVSSYRNKDLSSNFLERKFCEACGQSQPSKSGITYKVDYVVSIKEAEVILQKSITEHRSIKRGPIVAIIQSPNVQLLKSAVKALDDFPCANIPYNACDSQSEFLGWQQKAAQIGMQRCAASSQWFNDRISLARYAHVPLGNFGLDWTIFTADIFFSRALHDQQQVLWISDDGVPDIGGNNIEDVCFVDEVQQPFLNCCGAYRKISVELKIHHLVVNALLKSNQLNEMEGGGFDEAASNAPAFLVLKQLIQRCLVDAVTSGNEYADEILQHLYRWICRFLLIFLILSEAQTWLVDYVDSFLLLHCSPQSRLHDPALHRLLHKAMQKVFALLLAALRKLGATIIFANFSKVIIDTGRFDVSVAKAYCDSLLKTLQTRDLFEWIELKPVQFWHSLLFMDQYNYGGIPVKDGESQVEILRNWNIAEYLPKKIQDSFIRIVCQYLYIPWKYATKLAGARASLQRGDDTCNPSVESLESHMTEHLKEQLSSYFSNKLFEIVRDILLKQPRGSVHKGDAALEFIKYVCAALDLDQNVRDDVRKIKKNLLKFVHVREFAPEAEFSNPCTPFILPNVFCSSCNDCRDLDLCRDLDLCRDLDLSSDSPLEEQKWYCAVPGCEQPYDQEMIENALIQIVMQRERAYHVQDLVCGRCKQVKAAHLWEQCACAGTFHCKEDEKEFSSKMRILLDVAIRQKFELLQELISWILANGSKSKSVIISI 2197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46259942 46283304 - Maker00036116 Lcy5g2343 634158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2343 2197 MobiDBLite consensus disorder prediction 1 21 - -
Lcy5g2343 2197 Gene3D Palm domain of DNA polymerase 741 924 IPR023211 -
Lcy5g2343 2197 CDD DNA_polB_epsilon_exo 279 483 - -
Lcy5g2343 2197 Gene3D - 928 1112 IPR042087 -
Lcy5g2343 2197 FunFam DNA polymerase epsilon catalytic subunit 279 507 - -
Lcy5g2343 2197 Pfam DNA polymerase family B, exonuclease domain 250 439 IPR006133 -
Lcy5g2343 2197 FunFam DNA polymerase epsilon catalytic subunit 711 786 - -
Lcy5g2343 2197 Pfam Domain of unknown function (DUF1744) 1780 1888 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Lcy5g2343 2197 Pfam Domain of unknown function (DUF1744) 1514 1761 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Lcy5g2343 2197 FunFam DNA polymerase epsilon catalytic subunit 928 1112 - -
Lcy5g2343 2197 FunFam DNA polymerase epsilon catalytic subunit 744 924 - -
Lcy5g2343 2197 CDD POLBc_epsilon 542 1109 - -
Lcy5g2343 2197 Pfam DNA polymerase epsilon catalytic subunit A, thumb domain 933 1108 - -
Lcy5g2343 2197 Pfam Zinc finger domain of DNA polymerase-epsilon 2122 2184 IPR054475 -
Lcy5g2343 2197 Gene3D DNA Polymerase, chain B, domain 1 60 218 - -
Lcy5g2343 2197 SMART polmehr3 278 830 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Lcy5g2343 2197 SUPERFAMILY Ribonuclease H-like 63 506 IPR012337 -
Lcy5g2343 2197 SUPERFAMILY DNA/RNA polymerases 508 1128 IPR043502 -
Lcy5g2343 2197 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 9 640 IPR029703 GO:0000278(PANTHER)|GO:0003677(InterPro)|GO:0003677(PANTHER)|GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0045004(PANTHER)
Lcy5g2343 2197 SMART DUF1744_2 1499 1888 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Lcy5g2343 2197 FunFam DNA polymerase epsilon catalytic subunit 60 220 - -
Lcy5g2343 2197 Gene3D - 277 507 IPR036397 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1885 Lcy-Chr5:41701316 Lcy5g2343 Lcy-Chr5:46259942 1.46E-73 dispersed
Lcy5g2343 Lcy-Chr5:46259942 Lcy8g1984 Lcy-Chr8:46098678 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2343 K02324 - csv:101208568 3526.1