Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2358 ATGCTGGCTGATCTCTCTTCTTCTCCTTCACTTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAAAGAAAGAGAAGACCTGCTGGAACTCCAGACCCAGATGCGGAGGTGGTTTCTCTCTCTCCGAAAACCCTATTGGAATCGGATCGTTACGTATGTGAGATCTGCAACCAAGGGTTCCAGAGAGATCAGAATCTACAGATGCATCGACGGCGACACAAGGTGCCGTGGAAGCTGTTGAAGCGAACCGAGGCGGCGGCCGCGGTGAGAAAACGGGTGTTCGTTTGCCCTGAGCCGAGCTGCTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTGGGGATAAAGAAGCACTTTAGAAGAAAGCATAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCCAAAGGATATGCTGTTCAATCTGATTACAAAGCCCATCTCAAAACCTGTGGAACCAGAGGACATTCGTGTGACTGTGGTCGAGTTTTCTCCAGGGTGGAGAGTTTCATAGAACATCAAGATACTTGCAAATTGGGTGGTCATCAACAATCAGATAAAAAAATCCCATCTTTACAACCACCACCATGTTTATCAAGAACAGCTTCAAGTCCAACTCCAAGCCCTTCTTCAGATACAAATTTCAGCTTCTTAAACCAAAACCACACATCAACAACAACAACAACAAGATCTCCTCAAAAAGCTATTAGCTATCATCAAAATTTGGATCTTCAACTTTCCACCACTTCAACTTCCATTCATGTTTCAGTTTCTCCAAAAAGACATGAAAATCACTCAACCCATTTGCAGCTTTCAATTGGTTCTTGCAATTATGGTGAGAAAAATGAGAACAATAATATCAATAATGATGATCATCATCACATGATCAGTTGTGATGAGAAAATTGGAAGTGGGTTAGGTTTCTTGAGGCTGAAAGAGGAAGCCAAGGAGCAAATGAGAGTGGCAATGGAAGAGAAGGCAGTGGCTGAAGAAGCAAGAAATGAAGCAAAGAGGCAGATTGAATTGGCTGAGAAAGAGTTGGCCAATGCCAAGAGATTGAGACAACAAGCTCAAGCTGAGTTACAAAGAGCTCTTGCTTTGAAAGAACATGCCATCAAGAAAATCAACTCCACCATCCTCCAAATCACTTGCCAAGTTTGTAGGCAGCATTTTCATCAACTCCCCAAAATTTGA 1218 42.61 MLADLSSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEAAAAVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCKLGGHQQSDKKIPSLQPPPCLSRTASSPTPSPSSDTNFSFLNQNHTSTTTTTRSPQKAISYHQNLDLQLSTTSTSIHVSVSPKRHENHSTHLQLSIGSCNYGEKNENNNINNDDHHHMISCDEKIGSGLGFLRLKEEAKEQMRVAMEEKAVAEEARNEAKRQIELAEKELANAKRLRQQAQAELQRALALKEHAIKKINSTILQITCQVCRQHFHQLPKI 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46416795 46419606 + Maker00036755 Lcy5g2358 634173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2358 405 Coils Coil 320 382 - -
Lcy5g2358 405 Gene3D Classic Zinc Finger 122 199 - -
Lcy5g2358 405 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 367 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy5g2358 405 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Lcy5g2358 405 SMART c2h2final6 137 164 IPR013087 -
Lcy5g2358 405 SMART c2h2final6 101 131 IPR013087 -
Lcy5g2358 405 SMART c2h2final6 58 80 IPR013087 -
Lcy5g2358 405 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lcy5g2358 405 MobiDBLite consensus disorder prediction 24 44 - -
Lcy5g2358 405 FunFam protein indeterminate-domain 12-like 37 107 - -
Lcy5g2358 405 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 97 131 - -
Lcy5g2358 405 MobiDBLite consensus disorder prediction 194 242 - -
Lcy5g2358 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Lcy5g2358 405 Gene3D Classic Zinc Finger 36 101 - -
Lcy5g2358 405 MobiDBLite consensus disorder prediction 188 242 - -
Lcy5g2358 405 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Lcy5g2358 405 SUPERFAMILY beta-beta-alpha zinc fingers 57 157 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1583 Lcy-Chr10:40193461 Lcy5g2358 Lcy-Chr5:46416795 3.66E-108 dispersed
Lcy5g2358 Lcy-Chr5:46416795 Lcy5g2598 Lcy-Chr5:48629609 1.25E-97 dispersed
Lcy5g2358 Lcy-Chr5:46416795 Lcy13g2000 Lcy-Chr13:38981648 1.93E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20172 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2358 K25871 - csv:101210748 622.854