Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2364 ATGGCTCTGGTTCGTGATCGCCGCCAGTTGAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCCCGCTTCCCCCTCCCCCTACCTCCCTCCTCCGCCCCCGCTCCCGCCGCCTCCTCCGCCATCTCCTCCTCCGACCTCGACAGGCTCCAAGTCCTCGGCCAAGGCAACGGCGGCACCGTCTACAAGGTCCGCCACAAGCGCACCTCCACCACCTACGCTCTCAAGGTCGTCCACGGCGACTGCGATCCCACCGTCCGCCGCCAGGTTTTCAGAGAGATGGAGATTCTCCGCCGTACTGACTCTCCCTACGTCGTCCAGTGCCATGGAATCTTCGAGAAGCCGTCTGGAGATGTCACGATCTTGATGGAGTATATGGATCTAGGATCGCTCGATTCGCTCTTGAAGAAGAACTCGACGTTGTCCGAGGCCACGCTCGCTCACGTGTCGCGTCAGGTTCTTAACGGCCTTCACTACCTTCACTCTCACAAGATCATTCATCGCGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTGAGTAAGATCATGTGCAGGACTCTGGATGCTTGTAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCTGAGCGGTTCGATCCGGAGACTTACGGCGGAAATTACAACGGTTACGCCGGCGACATATGGAGTTTGGGGCTTACTCTTCTGGAGCTCTATTTAGGTCATTTTCCTTTTCTTCCGCCTGGTCAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGCGAGCCGCCGACGCTGCCGGAGGATGCGTCGGAGGAGTTTCGGAGCTTCGTCGAGTGTTGCTTGCAGAAGGAATCGAGCAAGCGGTGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTGTGTAAGGAATCGAGATCCGATCGGTGA 951 56.78 MALVRDRRQLNLRLPDLSDCRPRFPLPLPPSSAPAPAASSAISSSDLDRLQVLGQGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPEDASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCKESRSDR 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46474646 46475596 + Maker00036215 Lcy5g2364 634179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2364 316 FunFam Mitogen-activated protein kinase 2 128 316 - -
Lcy5g2364 316 ProSiteProfiles Protein kinase domain profile. 47 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2364 316 SUPERFAMILY Protein kinase-like (PK-like) 46 310 IPR011009 -
Lcy5g2364 316 FunFam Mitogen-activated protein kinase kinase 29 123 - -
Lcy5g2364 316 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524(InterPro)
Lcy5g2364 316 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 38 311 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lcy5g2364 316 Gene3D Phosphorylase Kinase; domain 1 33 127 - -
Lcy5g2364 316 Gene3D Transferase(Phosphotransferase) domain 1 129 316 - -
Lcy5g2364 316 Pfam Protein kinase domain 49 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2364 316 SMART serkin_6 47 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2364 316 CDD PKc_MAPKK_plant_like 46 308 - -
Lcy5g2364 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0089 Lcy-Chr13:899414 Lcy5g2364 Lcy-Chr5:46474646 7.61E-102 dispersed
Lcy4g2203 Lcy-Chr4:48603129 Lcy5g2364 Lcy-Chr5:46474646 9.60E-63 dispersed
Lcy5g2364 Lcy-Chr5:46474646 Lcy9g1314 Lcy-Chr9:37904579 8.82E-40 dispersed
Lcy5g2364 Lcy-Chr5:46474646 Lcy4g2246 Lcy-Chr4:49025183 9.43E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65984 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2364 K20604 - csv:101203133 582.022