Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2369 ATGGCAACTCGTCTGCTTTCTCTTTCTCTCTCGCTTCTGGGTTTCTTTCTTCTACTCCCCACTGCCAAACCAGATCTTGCTTCTGATAGAACAGCTCTTTTGGCCCTTCGTTCCGCTGTTGGTGGCCGAACTCTTCTGCTTTGGAATGTCACTATTCAGAGCCCCTGTTCTTGGCCTGGGATTCAATGCGAGGATAATCGTGTTACTATCCTTCGTCTTCCCGGCGATGCGCTTTCCGGCCAATTGCCGGTTGGGATTTTTGGGAACTTGACTCACCTTCGCACTCTCAGCCTTCGGCTCAACGCCCTTTCTGGTCAGCTCCCGTCAGATCTCTCCGCCTGCATTAATCTTCGCAACCTCTATTTGCAAGGTAATGAGTTTTCAGGCCCTGTCCCTGATTTCTTGTTCCGGCTTCCTGACCTTGTTCGTCTTAATTTGGCTTCCAATAACTTTTCTGGGGAGATCTCTCAGGGGTTCAACAATTTGACCCGTCTTAGGACCTTGTTTCTTGAAAATAATCACCTCTCTGGGTCTATTCCGGACTTGAAGATCCCTCTGGATCAGTTCAATGTTTCTAACAATCAATTAAATGGGTCGGTTCCAAAGGGATTGCAGTCGTTTTCTTCGAGTTCGTTTTTGGGTAATTCTCTCTGTGGGCGTCCTCTTGAGGCATGCGCTGGTGATGCTACTGTGCCGACAGGGGAGGTTAGGGAGATTGATGACTCTGAACACAAGAAAAAGCTCTCAGGGGGAGCCATTGCTGGGATTGTCATTGGATCTGTACTGGGTTTGATATTGATACTTGTAATCTTAATGCTTTTGTGCCGAAAGAAGAGTGCAAAGCAGACAAGTTCAGTCGATGTAGCCACAGTGAAACATCCTGAAGTTGAAATTCAGGGCGGTAAGCCAGCTGGGGAGATTGAAAATGGCGGTTATGGTAATGGTTATACCGTGCCAGCCACCGCTGCTGCTGCTGCTGCTGCAACAGTGGCAGCGGGGGCTGCAAAGGGGGAAGTGAATGGCACTGGAACTGGGTCTAAAAAATTGGTGTTTTTTGGTAATGCTGCGAGGGTATTTGATTTGGAGGATCTTTTGAGAGCTTCAGCAGAAGTGTTGGGGAAAGGAACTTTTGGGACTGCTTACAAAGCTGTTCTGGAAGTGGGTTCTGTCGTGGCTGTGAAGAGATTGAAGGATGTTACCATAACAGAGAGGGAATTCAGAGAGAAGATTGAGGCTGTTGGATCTATGGATCATGAAAATTTGGTCCCTCTCAGGGCTTACTATTTCAGTAGGGATGAGAAGCTTCTTGTCTATGATTACATGGCCATGGGAAGCTTATCTGCTCTTTTACATGGAAACAGAGGAGCTGGTAGGACTCCATTGAACTGGGAGATCAGATCTGGAATTGCCCTTGGAGCTGCTCGTGGCGTTGAATATCTGCATTCTCAAGGCCCTAATGTTTCCCATGGAAACATAAAATCATCCAATATTCTTCTAACCAAATCCTATGATGCTCGAGTCTCTGATTTCGGTTTAGCACATCTTGTTGGACCACCTTCCAGCCCCAACAGAGTTGCTGGATACCGTGCACCAGAGGTCACTGATCCTCGTAAAGTATCCCAGAAGGCTGATGTCTATAGCTTTGGCGTATTGCTCTTGGAGCTTTTGACAGGAAAGGCTCCTACTCACTCCCTTTTAAACGAGGAAGGAGTCGATTTACCTAGATGGGTTCAGTCAGTTGTTAGAGAAGAGTGGACATCCGAAGTTTTCGACCTCGAGCTTCTTAGGTACCAAAACGTTGAGGAGGAGATGGTTCAACTATTGCAGCTTGCAGTCGATTGCGCAGCTCAGTATCCTGATAAGCGTCCATCAATGTCCGAAGTCACAAGGCGTATAGAAGAGCTTCGCCAATCCAGCATTCACGAAGTTGTCAATCCACAACCTGCTCATGAGTCGGCCGACGCTAGGTGA 1971 47.54 MATRLLSLSLSLLGFFLLLPTAKPDLASDRTALLALRSAVGGRTLLLWNVTIQSPCSWPGIQCEDNRVTILRLPGDALSGQLPVGIFGNLTHLRTLSLRLNALSGQLPSDLSACINLRNLYLQGNEFSGPVPDFLFRLPDLVRLNLASNNFSGEISQGFNNLTRLRTLFLENNHLSGSIPDLKIPLDQFNVSNNQLNGSVPKGLQSFSSSSFLGNSLCGRPLEACAGDATVPTGEVREIDDSEHKKKLSGGAIAGIVIGSVLGLILILVILMLLCRKKSAKQTSSVDVATVKHPEVEIQGGKPAGEIENGGYGNGYTVPATAAAAAAATVAAGAAKGEVNGTGTGSKKLVFFGNAARVFDLEDLLRASAEVLGKGTFGTAYKAVLEVGSVVAVKRLKDVTITEREFREKIEAVGSMDHENLVPLRAYYFSRDEKLLVYDYMAMGSLSALLHGNRGAGRTPLNWEIRSGIALGAARGVEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPPSSPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHSLLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSEVTRRIEELRQSSIHEVVNPQPAHESADAR 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46513497 46516126 + Maker00036223 Lcy5g2369 634184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2369 656 ProSitePatterns Protein kinases ATP-binding region signature. 372 394 IPR017441 GO:0005524(InterPro)
Lcy5g2369 656 Gene3D Phosphorylase Kinase; domain 1 338 440 - -
Lcy5g2369 656 ProSiteProfiles Protein kinase domain profile. 366 644 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2369 656 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Lcy5g2369 656 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Lcy5g2369 656 Gene3D Ribonuclease Inhibitor 184 229 IPR032675 -
Lcy5g2369 656 SUPERFAMILY Protein kinase-like (PK-like) 370 632 IPR011009 -
Lcy5g2369 656 FunFam Probable inactive receptor kinase RLK902 26 183 - -
Lcy5g2369 656 CDD STKc_IRAK 372 635 - -
Lcy5g2369 656 Pfam Protein kinase domain 370 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2369 656 SUPERFAMILY L domain-like 28 210 - -
Lcy5g2369 656 FunFam pollen receptor-like kinase 1 335 440 - -
Lcy5g2369 656 FunFam Probable inactive receptor kinase At1g48480 441 643 - -
Lcy5g2369 656 PANTHER OS05G0588300 PROTEIN 11 649 IPR050994 -
Lcy5g2369 656 Gene3D Transferase(Phosphotransferase) domain 1 441 651 - -
Lcy5g2369 656 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1113 Lcy-Chr10:33488869 Lcy5g2369 Lcy-Chr5:46513497 1.76E-151 dispersed
Lcy12g0196 Lcy-Chr12:2415569 Lcy5g2369 Lcy-Chr5:46513497 2.31E-201 dispersed
Lcy4g2143 Lcy-Chr4:47944602 Lcy5g2369 Lcy-Chr5:46513497 1.96E-144 dispersed
Lcy5g2369 Lcy-Chr5:46513497 Lcy8g1684 Lcy-Chr8:43400948 5.60E-128 dispersed
Lcy9g1122 Lcy-Chr9:35142658 Lcy5g2369 Lcy-Chr5:46513497 8.98E-57 transposed
Lcy2g0359 Lcy-Chr2:2949894 Lcy5g2369 Lcy-Chr5:46513497 1.67E-67 wgd
Lcy4g0776 Lcy-Chr4:9268109 Lcy5g2369 Lcy-Chr5:46513497 2.41E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65985 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2369 - - - 0.0