Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2383 ATGAATATGTGGATGATGGGTTACAATGACGGCGGAGATTTGAACTTTGCTGCTGATTCATTCAATGGTCGAAAGCTTAGACCTCTCATTCCTCGCCCTCTCTCTTCTCTTTCCACCTCTTCTTCTTCTTCCACTTCCATTAATCCTCCTTTAAACCTTATCCACACCAACGATTTCTTCTCTCAATTTCATCACATGGCGACGGTGACAGATCAGAGTAAGAGAGAGTTGAACAATGTGCCGCCACCGGTGGTGGTGAGCTCGCGGTGGAATCCGACGCCGGAGCAGTTGAGGGTGCTGGAAGAATTGTACCGGCGGGGGACTCGAACCCCGTCCGCCGATCAAATTCAACACATCACTGCTCAGCTTCGTCGCTATGGTAAGATTGAAGGTAAGAATGTGTTCTACTGGTTTCAGAACCACAAAGCCAGAGAGCGCCAGAAACGTCGCCGACAGATGGAATCCGCCATCACCGCCGACCACTCGACTCGCGACGTCGAAATCCTCGAAAGGAAAGATTCAGGTTCGGGTAGGACAGTCTATGAAGTTGAACAGACCAAAAACTGGGCTCCCTCTACAAACTGCAGTACACTTCCGGAGGAATCTGTTCCAATTCAACGGGCGGCAAAAGCAAGTGTAATGGCAGCTGATTGCAGGGCAGAAAATGGATGGATCCAATTCGAGGAATTACACCAAAGAAGGAATAACAACAACAACTTTGCTGAAAAGCATAGCAGCAGCAGCAATAATAACAACAATGCAGCCTCCTTGCAGTTGATGCATTGTCCGGCCGCCGCTCTCGGCGGTGGCGGTGGCGGGCAGCTGATGATGAACACTGCAGCCATCACCACCACAGCCACAGTGACAACAATAATGCACCAAAAGTGTCATCATAGTGATCTTTCAGGCTTTGTTGAAGAATTAGAAGAAGAATTGGAAGAAGAAGAAGAAGGATGTGGGGAATCTGAAACCCTACAACTTTTTCCTTTGTGCAGTGACAGAAGAAATGGAGAGATTATTGGAGGCAAAAATGGATGTGAAACAGTGGAAAGTTCAGGCATGAATAGTAGTAATCTGACTCCACTTCAATTCTTTGAATTCCTTCCATTGAAGAATTGA 1119 47.27 MNMWMMGYNDGGDLNFAADSFNGRKLRPLIPRPLSSLSTSSSSSTSINPPLNLIHTNDFFSQFHHMATVTDQSKRELNNVPPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITADHSTRDVEILERKDSGSGRTVYEVEQTKNWAPSTNCSTLPEESVPIQRAAKASVMAADCRAENGWIQFEELHQRRNNNNNFAEKHSSSSNNNNNAASLQLMHCPAAALGGGGGGQLMMNTAAITTTATVTTIMHQKCHHSDLSGFVEELEEELEEEEEGCGESETLQLFPLCSDRRNGEIIGGKNGCETVESSGMNSSNLTPLQFFEFLPLKN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46630837 46634232 + Maker00036429 Lcy5g2383 634198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2383 372 ProSiteProfiles 'Homeobox' domain profile. 93 148 IPR001356 GO:0003677(InterPro)
Lcy5g2383 372 SMART HOX_1 85 152 IPR001356 GO:0003677(InterPro)
Lcy5g2383 372 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 81 368 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Lcy5g2383 372 FunFam WUSCHEL-related homeobox 4 87 154 - -
Lcy5g2383 372 Coils Coil 298 325 - -
Lcy5g2383 372 CDD homeodomain 89 149 IPR001356 GO:0003677(InterPro)
Lcy5g2383 372 Gene3D - 87 154 - -
Lcy5g2383 372 SUPERFAMILY Homeodomain-like 87 154 IPR009057 -
Lcy5g2383 372 Pfam Homeodomain 88 147 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2095 Lcy-Chr13:39934120 Lcy5g2383 Lcy-Chr5:46630837 1.18E-26 dispersed
Lcy1g0300 Lcy-Chr1:2680781 Lcy5g2383 Lcy-Chr5:46630837 5.68E-15 transposed
Lcy1g0635 Lcy-Chr1:5476337 Lcy5g2383 Lcy-Chr5:46630837 2.53E-25 transposed
Lcy8g1854 Lcy-Chr8:44868386 Lcy5g2383 Lcy-Chr5:46630837 5.24E-27 transposed
Lcy10g2207 Lcy-Chr10:45984892 Lcy5g2383 Lcy-Chr5:46630837 5.58E-26 transposed
Lcy2g0387 Lcy-Chr2:3229147 Lcy5g2383 Lcy-Chr5:46630837 6.17E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20176 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2383 - - - 0.0