Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2383 ATGAATATGTGGATGATGGGTTACAATGACGGCGGAGATTTGAACTTTGCTGCTGATTCATTCAATGGTCGAAAGCTTAGACCTCTCATTCCTCGCCCTCTCTCTTCTCTTTCCACCTCTTCTTCTTCTTCCACTTCCATTAATCCTCCTTTAAACCTTATCCACACCAACGATTTCTTCTCTCAATTTCATCACATGGCGACGGTGACAGATCAGAGTAAGAGAGAGTTGAACAATGTGCCGCCACCGGTGGTGGTGAGCTCGCGGTGGAATCCGACGCCGGAGCAGTTGAGGGTGCTGGAAGAATTGTACCGGCGGGGGACTCGAACCCCGTCCGCCGATCAAATTCAACACATCACTGCTCAGCTTCGTCGCTATGGTAAGATTGAAGGTAAGAATGTGTTCTACTGGTTTCAGAACCACAAAGCCAGAGAGCGCCAGAAACGTCGCCGACAGATGGAATCCGCCATCACCGCCGACCACTCGACTCGCGACGTCGAAATCCTCGAAAGGAAAGATTCAGGTTCGGGTAGGACAGTCTATGAAGTTGAACAGACCAAAAACTGGGCTCCCTCTACAAACTGCAGTACACTTCCGGAGGAATCTGTTCCAATTCAACGGGCGGCAAAAGCAAGTGTAATGGCAGCTGATTGCAGGGCAGAAAATGGATGGATCCAATTCGAGGAATTACACCAAAGAAGGAATAACAACAACAACTTTGCTGAAAAGCATAGCAGCAGCAGCAATAATAACAACAATGCAGCCTCCTTGCAGTTGATGCATTGTCCGGCCGCCGCTCTCGGCGGTGGCGGTGGCGGGCAGCTGATGATGAACACTGCAGCCATCACCACCACAGCCACAGTGACAACAATAATGCACCAAAAGTGTCATCATAGTGATCTTTCAGGCTTTGTTGAAGAATTAGAAGAAGAATTGGAAGAAGAAGAAGAAGGATGTGGGGAATCTGAAACCCTACAACTTTTTCCTTTGTGCAGTGACAGAAGAAATGGAGAGATTATTGGAGGCAAAAATGGATGTGAAACAGTGGAAAGTTCAGGCATGAATAGTAGTAATCTGACTCCACTTCAATTCTTTGAATTCCTTCCATTGAAGAATTGA 1119 47.27 MNMWMMGYNDGGDLNFAADSFNGRKLRPLIPRPLSSLSTSSSSSTSINPPLNLIHTNDFFSQFHHMATVTDQSKRELNNVPPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITADHSTRDVEILERKDSGSGRTVYEVEQTKNWAPSTNCSTLPEESVPIQRAAKASVMAADCRAENGWIQFEELHQRRNNNNNFAEKHSSSSNNNNNAASLQLMHCPAAALGGGGGGQLMMNTAAITTTATVTTIMHQKCHHSDLSGFVEELEEELEEEEEGCGESETLQLFPLCSDRRNGEIIGGKNGCETVESSGMNSSNLTPLQFFEFLPLKN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46630837 46634232 + Maker00036429 Lcy5g2383 634198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2383 372 ProSiteProfiles 'Homeobox' domain profile. 93 148 IPR001356 GO:0003677(InterPro)
Lcy5g2383 372 SMART HOX_1 85 152 IPR001356 GO:0003677(InterPro)
Lcy5g2383 372 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 81 368 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Lcy5g2383 372 FunFam WUSCHEL-related homeobox 4 87 154 - -
Lcy5g2383 372 Coils Coil 298 325 - -
Lcy5g2383 372 CDD homeodomain 89 149 IPR001356 GO:0003677(InterPro)
Lcy5g2383 372 Gene3D - 87 154 - -
Lcy5g2383 372 SUPERFAMILY Homeodomain-like 87 154 IPR009057 -
Lcy5g2383 372 Pfam Homeodomain 88 147 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2383 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2095 Lcy-Chr13:39934120 Lcy5g2383 Lcy-Chr5:46630837 1.18E-26 dispersed
Lcy1g0300 Lcy-Chr1:2680781 Lcy5g2383 Lcy-Chr5:46630837 5.68E-15 transposed
Lcy1g0635 Lcy-Chr1:5476337 Lcy5g2383 Lcy-Chr5:46630837 2.53E-25 transposed
Lcy8g1854 Lcy-Chr8:44868386 Lcy5g2383 Lcy-Chr5:46630837 5.24E-27 transposed
Lcy10g2207 Lcy-Chr10:45984892 Lcy5g2383 Lcy-Chr5:46630837 5.58E-26 transposed
Lcy2g0387 Lcy-Chr2:3229147 Lcy5g2383 Lcy-Chr5:46630837 6.17E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g2383 . 3 201 Wox Gene Family AT3G18010 57.5 1.5e-50 197.6
Lcy2g0387 . 1 156 Wox Gene Family AT3G18010 56.2 9.3e-40 161.8
Lcy6g2349 . 1 276 Wox Gene Family AT4G35550 50.2 1.9e-64 243.4
Lcy6g2349 . 34 160 Wox Gene Family AT1G20700 58.5 1.9e-37 153.3
Lcy13g2095 . 10 164 Wox Gene Family AT1G46480 68.1 5.2e-53 204.9
Lcy5g2383 . 3 201 Wox Gene Family AT3G18010 57.5 1.5e-50 197.6
Lcy2g0387 . 1 156 Wox Gene Family AT3G18010 56.2 9.3e-40 161.8
Lcy13g2095 . 10 164 Wox Gene Family AT1G46480 68.1 5.2e-53 204.9
Lcy6g2349 . 1 276 Wox Gene Family AT4G35550 50.2 1.9e-64 243.4
Lcy6g2349 . 34 160 Wox Gene Family AT1G20700 58.5 1.9e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004252 3 1 2 3 2 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20176 None None None None Lcy TF