Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2386 ATGAAGAACCTCCTCAAGAAGTTCCACATCATGTCCAGTGGTCAGTCAGACGATGCAGCAGAAGGGTCTACTTCATCGAGGGGCAGTAAATTAATTGAGGTTTCATCGCCTGATAAACTGCCATCTCGCTCTCGACCGACCCATTTTAATTCGGAGCATAAACCCTTTTCAGGGTTATCCGGTTGGTTGAACTCTGTTACAAATAGGCGTAGCCCCAGTCCTCCATCATCTTCGAATCCCACAGCAGGGGAGATAATGGAGCCATCTGATTCAGTATCTAGCAGAGATGCTGCAATGGATACATCAAGGCATGATTCAGGGTCGAGCAACTCGAGGGATCCTGATATAGAGGAAGAGTATCAGATACAGCTTGCTTTGGAAATGAGTGCCAGAGAGGATCCTGAGGCGGCTCAGATTGAGGCTGTGAAGCAGATCAGTTTGGGGTCATGTGATCCTGATAACAGTCCAGCTGAAGTTATTGCCTTCAGATATTGGGATGGCCATGTTCCTTTATTGGTTGGGGAGGAAGTGTTGAGAGATAATGTGCGGGGTGGAAATTCAGCATCTGTTCACAATATTTTGGCAGCTAAAAAGAAGAAAAACTTCATCATGGAGTTGGTTTCTGATGGAGTCAGTTTGTTGGAGCATAAGGGCTTGGAGCTTTATTGGGGTGTACCCGTGTGTTATACTTATCTCTTACTCTTATGTGGAGATGTCATCGGGAGATTTATGCGTGCTTCACAGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTTTATGACCTATATGGAGTCTTCACTGAGTCCACCTCAGAAAGAATGCCTTCCCTAGTTGATCTGCAAGGAGCACCAATGTCTGACAGTGTCACTTGGGAAGCAGTTCTGATCAATAAAGCTGCTGATGCTAACTTATTGAAACTTGAACAGACGGCATTGGAGATGGCCATCAAGATGAGGTCGGAATCTCCAGTTTCTGTAAATAGTTATTTGGTGCGGAAGCTTTCTGTTTTAGTTTCGGATTATATGGGGGGACCAGTGGGGGATCCTGAAAAGATGTTGAGGAAATGGAGAAATCTTAGTTACAGCTTGAAAGCAACCCTTGGTAGTATGGTTTTGCCTCTTGGCTCCCTTACTGTAGGGTTGGCCCGTCATCGTGCATTGTTATTCAAGCCGTTGCCGTCATGGTTAAGGTTGGTGAAAGGACCACAGTACACAGGTTCTGATGACGTGGCGATGAACTTCATAAAGATTGATGATGGAAGGGAGTACATTGTGGATTTAATGGCAGATCCTGGTACACTTATTCCAGCTGATGTTGCTGGATTGCATGTAGAGTATGATGAATCCCCTTTTTCAGCCAGTCCGCTTTCTAGAGATGTTGATTCCTCTCAGGCAGCCTCTTCAAGCAGTGGGGTTGGCAGTTCATTAGAGGAAAATTCAGATTTTGGGACTTCGGATAGGAAACCAAAGTCCCGGAATTTCAGTGCCACAAAGGAATATGATCCTCCCAATGTCGACAAGGGGCTATCACGCGATTTTGCTAGCAAACCAAATTATCCTGGCATGCACGTTAGATCACCTTCTTGGACTGAGGGTGTTAGTTCACCTGCAGTGCGCAGAATGAAAGTAAAGGATGTTTCACAATACATGATTGATGCTGCCAAAGAGAATCCACGACTGGCTCAGAAGCTTCATGACGTGTTACTTGAAAGTGGTGTAGTTGCACCTCCTAACTTGTTTACCGAGGCATACCCTGACCAAATAGATGTTATTGTTGAGTCTAAGTCACCAACTGAAGGCAAGGATCAAAGTAGAAAGGTGTCTGGTCTCTTCGAAAAGGGTGAACGAATATCAGATAGATCGGCAGGGAATGAAAGCACAAAATCAGATATCACCCTTGACGACGTTGCAGAATGCGAGATCCCATGGGAAGAAATCTCCGTGGGAGAGCGTATTGGACTTGGTTCATATGGGGAGGTCTATCGTGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAGGTTTCTAGACCAGGATATTTCTGGTGAATCTCTTGAAGAATTCAAAAGTGAGGTACGAATTATGAAAAGGCTTCGGCATCCAAATGTTGTTCTCTTCATGGGAGCTGTGACACGTGCTCCCAATCTTTCAATTGTTACAGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTAATTCACCGTCCCAACAATCAATTAGATGAACGAAAGCGATTGAGGATGGCCCTTGATGCAGTATGTGATTTTGGTTTATCAAAAATGAAGCATAGCACATTTCTTTCTTCAAGGTCAACAGCTGGAACGGCTGAATGGATGGCCCCAGAAGTGTTGAGAAATGAACCTTCAGATGAGAAGTGTGACGTTTATAGTTATGGAGTCATACTATGGGAGCTTTCTACAATGCAACAACCATGGGGAGGAATGAACCCAATGCAAGTTGTTGGCGCTGTTGGCTTTCAGCATCGTCGTCTCGACATCCCAGACAATCTGGATCCTGCCATTGCTGACATTATTAGGAAATGCTGGCAAACATCACATTTGTTCTTGTTAGCTAATTGCATTCTAGTGCGATCAGGATCTGATGAGGCACATTTGGAAGGGTTTGCTGAGAGATCCAAGATTAAGACCTTCATTTGCCGAGATCATGGCTGCGCTAAAGCCGCTGCAGAAGCCAATGTCGAGTTCTCAAGTACCGAGACCAAATGCCCCTGCAGCTTCTATCTGCTTTTGATCATGGCTTCTCTTTTCGGATCAACTGCATTTCTCTCCCACCCACTTACCAGAACTTTTCACTTAGCTTCCTCACAAACACCTTCACCTTCAACCCCACCTTCCCAACCGCCGCAAACTCCGCCGCCATCTCCATCTCTGAGCACTTCTTCATCGGAGCAACTAAAACCAGCTCCAACAAAGGTGGAGCCACAGAGGCCTACCACCAATGTCGAGTCTACGGATTGGATTGCTTCAACCTTGACAAGGCGATTTGGGCTCGGCGCCGGCCTTGCCTGGGCTGCTTTTCTCGCCGTTGGTGTAGTCTCCGAGCAGATCAAAACTCGCCTCGAAGTCTCTCAAGAAGAAGCAAATACAAGAAACGTTGAAAAGGAAGAGGAAGTGGTGTTACCCAATGGCATAAGGTACTACGAGCTGAGAGTCGGCGGTGGCGCTGTACCGAGATCCGGGGACTTGGTTGTGATTGATCTCAAGGGGAAAATACAGGGCACTGAGGAAGTATTTGTAGATACATTTGACAATGACAGAAAGCCACTGGCTTTGGTGATGGGCTCAAGACCTTACAGCAAAGGAATGTGTGAAGGTTTGGAATATGTGCTGAGATCCATGAAATCAGGTGGTAAGAGGAGAGTTGTGATTCCTTCTGGTTTGGGGTTTGGAGAAAAGGGTGCTGATTTAGGTTCTGGGGTTCAAATTCCTCCATTTGCAACTTTAGAGTATGTAGTTGAGATTGATAAGGTTTCCATTGCACCTGCTTGA 3519 45.69 MKNLLKKFHIMSSGQSDDAAEGSTSSRGSKLIEVSSPDKLPSRSRPTHFNSEHKPFSGLSGWLNSVTNRRSPSPPSSSNPTAGEIMEPSDSVSSRDAAMDTSRHDSGSSNSRDPDIEEEYQIQLALEMSAREDPEAAQIEAVKQISLGSCDPDNSPAEVIAFRYWDGHVPLLVGEEVLRDNVRGGNSASVHNILAAKKKKNFIMELVSDGVSLLEHKGLELYWGVPVCYTYLLLLCGDVIGRFMRASQNYNSLSYDDKILDGFYDLYGVFTESTSERMPSLVDLQGAPMSDSVTWEAVLINKAADANLLKLEQTALEMAIKMRSESPVSVNSYLVRKLSVLVSDYMGGPVGDPEKMLRKWRNLSYSLKATLGSMVLPLGSLTVGLARHRALLFKPLPSWLRLVKGPQYTGSDDVAMNFIKIDDGREYIVDLMADPGTLIPADVAGLHVEYDESPFSASPLSRDVDSSQAASSSSGVGSSLEENSDFGTSDRKPKSRNFSATKEYDPPNVDKGLSRDFASKPNYPGMHVRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESKSPTEGKDQSRKVSGLFEKGERISDRSAGNESTKSDITLDDVAECEIPWEEISVGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVRIMKRLRHPNVVLFMGAVTRAPNLSIVTEFLPRGSLYRLIHRPNNQLDERKRLRMALDAVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLDIPDNLDPAIADIIRKCWQTSHLFLLANCILVRSGSDEAHLEGFAERSKIKTFICRDHGCAKAAAEANVEFSSTETKCPCSFYLLLIMASLFGSTAFLSHPLTRTFHLASSQTPSPSTPPSQPPQTPPPSPSLSTSSSEQLKPAPTKVEPQRPTTNVESTDWIASTLTRRFGLGAGLAWAAFLAVGVVSEQIKTRLEVSQEEANTRNVEKEEEVVLPNGIRYYELRVGGGAVPRSGDLVVIDLKGKIQGTEEVFVDTFDNDRKPLALVMGSRPYSKGMCEGLEYVLRSMKSGGKRRVVIPSGLGFGEKGADLGSGVQIPPFATLEYVVEIDKVSIAPA 1172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46649161 46665486 - Maker00036243 Lcy5g2386 634201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2386 1172 MobiDBLite consensus disorder prediction 950 965 - -
Lcy5g2386 1172 Coils Coil 1027 1047 - -
Lcy5g2386 1172 Gene3D Phosphorylase Kinase; domain 1 643 727 - -
Lcy5g2386 1172 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP17-2, CHLOROPLASTIC 922 1172 IPR053111 GO:0009507(PANTHER)
Lcy5g2386 1172 MobiDBLite consensus disorder prediction 16 32 - -
Lcy5g2386 1172 SUPERFAMILY FKBP-like 995 1167 - -
Lcy5g2386 1172 FunFam Serine/threonine-protein kinase isoform 1 641 728 - -
Lcy5g2386 1172 ProSiteProfiles Protein kinase domain profile. 650 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2386 1172 MobiDBLite consensus disorder prediction 966 993 - -
Lcy5g2386 1172 MobiDBLite consensus disorder prediction 1 116 - -
Lcy5g2386 1172 MobiDBLite consensus disorder prediction 942 993 - -
Lcy5g2386 1172 SUPERFAMILY Protein kinase-like (PK-like) 633 855 IPR011009 -
Lcy5g2386 1172 MobiDBLite consensus disorder prediction 598 633 - -
Lcy5g2386 1172 MobiDBLite consensus disorder prediction 456 540 - -
Lcy5g2386 1172 Gene3D Transferase(Phosphotransferase) domain 1 755 857 - -
Lcy5g2386 1172 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 1067 1164 IPR001179 GO:0003755(InterPro)
Lcy5g2386 1172 Gene3D - 1021 1170 IPR046357 GO:0003755(InterPro)
Lcy5g2386 1172 FunFam Peptidylprolyl isomerase 1022 1170 - -
Lcy5g2386 1172 MobiDBLite consensus disorder prediction 97 116 - -
Lcy5g2386 1172 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1070 1168 IPR001179 GO:0003755(InterPro)
Lcy5g2386 1172 MobiDBLite consensus disorder prediction 485 499 - -
Lcy5g2386 1172 CDD STKc_MAP3K-like 656 854 - -
Lcy5g2386 1172 MobiDBLite consensus disorder prediction 459 484 - -
Lcy5g2386 1172 ProSitePatterns Protein kinases ATP-binding region signature. 656 677 IPR017441 GO:0005524(InterPro)
Lcy5g2386 1172 Pfam Protein tyrosine and serine/threonine kinase 756 855 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2386 1172 Pfam Protein tyrosine and serine/threonine kinase 651 754 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2386 1172 Pfam Ethylene-responsive protein kinase Le-CTR1 249 439 - -
Lcy5g2386 1172 MobiDBLite consensus disorder prediction 51 88 - -
Lcy5g2386 1172 MobiDBLite consensus disorder prediction 599 627 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1276 Lcy-Chr1:12109329 Lcy5g2386 Lcy-Chr5:46649161 2.14E-98 dispersed
Lcy5g2386 Lcy-Chr5:46649161 Lcy9g1679 Lcy-Chr9:42015894 9.10E-90 dispersed
Lcy5g2386 Lcy-Chr5:46649161 Lcy9g1979 Lcy-Chr9:44705340 1.49E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65986 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2386 - - - 0.0