Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2387 ATGATTGGCCACCGAGAAATTCGCGAAAGAGGGAGAACGGAAATTGCTGGAATTGAATGGCAGAGAGCTGAATCAGAACCGAGGAAGGCGACTACTGGTTCTATACGGGTAAGGCAGATGTTCCACCAGATTAATCAAGATGGTGAGAAGCAATCAGATTTTTTCACAGAGTATGGAGAAGCAAGCCGATACCAAATTCAGGAAGTTATTGGGAAAGGAAGCTACGGAGTTGTTGGTTCTGCAATTGACACCCAGACTGGTGAAAGAGTTGCTATCAAGAAAATTAATGATGTTTTTGAGCACGTGTCTGATGCCATACGCATCCTGAGAGAAATTAAGCTTCTTCGGATGCTTCATCATCCAAATATTGTAGAGATAAAGCATATTATGCTTCCTCCCTCACAACGAGAGTTCAAAGATATATATCTTGTTTTTGAGTTGATGAAGTCTGACCTCCACCACGTAATCAAGGCAAATAATAATCTCTCTCCCAAGCAGCATAAATTTTTCTTGTACCAGCTTCTCAGTGGTCTAAAATATATACATGCAGCAAATGTCCTTCATCGAGATTTGAAGCCCAAAAACATACTTGCCAATGCTGACTGCAGACTGAAGATATGTGATTTTGGGCTTGCTCGCGTATCTTTTAGTGATGCGCCATCTACTATTTTCTGGACAGATTATGTTGCAACTCGTTGGTATCGTGCTCCCGAACTCTGTGGATCATTTTTCTCGAGATATACCCCTGCTATAGATATATGGAGTATCGGATGCATATTTGCAGAAATGCTTACGGGAAAACCTTTGTTTCCTGGAAAAAATGTGGTTCATCAATTAGATCTAATTACCGATTTGTTTGGCACTCCTGAGGCTGAAGCCATAGCGAAGATTCGGAATGAGAAGGCAAGGAGGTATCTTGGAAACATGCGTAAAAAACCACCAGTTCCATTCTCACGAAAGTTCCCTAATGTTGACCCATTGGCACTTCATTTACTGGAACGCCTCCTGGCATTTGATCCCAAATGTCGTCTAACTGCTGCAGAGGCACTTGCCGATCCTTACTTCAATGGTTTCGTGAAAGCAGAACTTGAACCTTCTATTCAACCAATTTCAAAACTTGAGTTTGAGTTTGAGAGGAGGAGATTATCAAAAGATGATGTTAGAGAGTTAATTTATGCAGAGATTTTAGAGTATCATCCCAAAATGCGTCAGGAGAGTCTACGCGATGGAGATCAAACTACCTTTATGTATCCAAGTGGCGTTGATCGATTTAAGCTTCAGTTTGCTCATCTGGAAGAGCTCAAAGGTCAAAGAAGTCCTACACTTCAAAGGCAGAACGTTTCTTTACCTCGGGAGCGGGTTAGTCCACCTGAGCACAAGATCGCTGAGCATAACTTTGATTTTGAAATGGGGAAAGACAAAAGTGCTCACCTCTTGAAAAGTGCTAGCATTAGTGCATCCAGGTGTGTTGGGGTGATACCAAAGGAGAAGTCTGAGGCAGGAGAAACGAGTTCTGAAGTGAAAAATGAAGCAGTCGATGGCTTGTCTAAAAAAATTGCAGTCCTTCAGACTTGA 1575 41.97 MIGHREIRERGRTEIAGIEWQRAESEPRKATTGSIRVRQMFHQINQDGEKQSDFFTEYGEASRYQIQEVIGKGSYGVVGSAIDTQTGERVAIKKINDVFEHVSDAIRILREIKLLRMLHHPNIVEIKHIMLPPSQREFKDIYLVFELMKSDLHHVIKANNNLSPKQHKFFLYQLLSGLKYIHAANVLHRDLKPKNILANADCRLKICDFGLARVSFSDAPSTIFWTDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLITDLFGTPEAEAIAKIRNEKARRYLGNMRKKPPVPFSRKFPNVDPLALHLLERLLAFDPKCRLTAAEALADPYFNGFVKAELEPSIQPISKLEFEFERRRLSKDDVRELIYAEILEYHPKMRQESLRDGDQTTFMYPSGVDRFKLQFAHLEELKGQRSPTLQRQNVSLPRERVSPPEHKIAEHNFDFEMGKDKSAHLLKSASISASRCVGVIPKEKSEAGETSSEVKNEAVDGLSKKIAVLQT 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46674684 46681145 + Maker00036250 Lcy5g2387 634202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2387 524 Gene3D Transferase(Phosphotransferase) domain 1 150 378 - -
Lcy5g2387 524 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 61 396 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lcy5g2387 524 Gene3D Phosphorylase Kinase; domain 1 80 400 - -
Lcy5g2387 524 SUPERFAMILY Protein kinase-like (PK-like) 60 360 IPR011009 -
Lcy5g2387 524 Pfam Protein kinase domain 64 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2387 524 CDD STKc_TDY_MAPK 63 400 - -
Lcy5g2387 524 ProSiteProfiles Protein kinase domain profile. 64 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2387 524 FunFam Mitogen-activated protein kinase 53 157 - -
Lcy5g2387 524 ProSitePatterns MAP kinase signature. 99 202 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2387 524 ProSitePatterns Protein kinases ATP-binding region signature. 70 94 IPR017441 GO:0005524(InterPro)
Lcy5g2387 524 FunFam Mitogen-activated protein kinase 150 378 - -
Lcy5g2387 524 SMART serkin_6 64 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0392 Lcy-Chr2:3286615 Lcy5g2387 Lcy-Chr5:46674684 1.42E-240 dispersed
Lcy4g0694 Lcy-Chr4:8342090 Lcy5g2387 Lcy-Chr5:46674684 5.87E-49 dispersed
Lcy5g2387 Lcy-Chr5:46674684 Lcy7g1245 Lcy-Chr7:15588274 7.09E-229 dispersed
Lcy2g0403 Lcy-Chr2:3377461 Lcy5g2387 Lcy-Chr5:46674684 1.80E-48 wgd
Lcy4g0766 Lcy-Chr4:9168547 Lcy5g2387 Lcy-Chr5:46674684 1.21E-215 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65987 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2387 - - - 0.0