Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2410 ATGAAAATGAAAATCATCCGCAACTTGTTCTTGATCTCGTTCATCAAGTTTCATTTCTGGGCATGTTTCAGCGAAGAATTTGAAACTTGCGAGGTGAATTACAACTGCGGAGAATTGGTAAACATCACGTATCCCTTCTGGGGGAATGGGAGGCCGAGGTTGTGCGGGCTGCCAGAATTCGAGCTCAAGTGCAAAAACAACCGAGCCACCACGATTCAAATAAACTCGATGGAATATATCGTTCTGAAAATCGACCAGTCGGATCAAATAATGAGGATCGCAAGATCAGACCTGTTCGATGATATCTGCCCGAGAAGCCAAATCAAAACAGAGATCACTCTGTCTCGTCCTTGGTTCGTGAACGATCGGAACTTTGGGAACCTGAGGCTGTGGTACAATTGCTTGGCCCGGAATGATTCCTTGGACGAATACAGATTTTGGTGCGGGTGGAAAAGGGAAAAGGAGGGGAGAGCGAATTTTGCTTTCTGGGTGGAGATGGAAATGAATTTCGACATGGAAGGGTGTGAAATGAATATCAATGTGACCATGATGAATTATCGTTTGGGAGATGGAAATAACTACACGGCGCTGGTGGAGAAGGCCGTGAGAGGAGGATTCGACGTCAAATACGAAGCGGAGTATACGGTAACGTGCGACGGATGCAAGGAAGCCGGCGGAAGTTGCCGACGAAACGCGACGTACTGCGTTTGTCAAGATGGAAACGCACGTCCAGATGAAATCGAACATATTATAAAGAGATATTCCACACAAACACCCAAGCGATACAGTTACTCAAAGCTGAAGAAAATGACAGACTCCTTCAAGAACAAGCTAGGCCAAGGAGGATTCAGCACAGTCTACAAAGGAAGATTACCGGACGGCTGCGAAGTGGCGGTCAAACTTCTGAAAGAATCCAGAAAAAACAGCCAAGATTTTATAAACGAAGTGGTTAGTATCACCAGAACTTCGCATGTAAATATAGTCACTCTCTTGGGTTTCTGCTACGAGCATAACAAAAGAGCTTTAATTTATGAGTATATGCCCAGAGGATCATTGGATAAGTATATATTCGAGGGAGGACTAGAAAAAAGTGAGGTGGGTTTGGACTGGAACGTGCTGTATAGCATCGTTATGGGCGTGGCACGAGGGTTAGAATACTTGCATCGCGGCTGCAGCACAAGGATTTTGCATTTCGATATCAAGCCACACAACATTCTTTTGGACGATGACTTCTGTCCCAAGATCTCAGACTTTGGACTTGCCAAGCAATGCAAGGCCAGAGAGAGTCACGTGTCGATGACAGGTGCAAAGGGGACGGTGGGATTCATGGCTCCGGAAGTAATAATCAAAAGCTTTGGCAAAGTTTCCCACAAGTCTGATGTTTATAGTTATGGAATGTTGGTTCTTGAGATGGTGGGTGAGAGAAAGAGTCCCCTGCGGGTGAAGAGTGAAGAGTATTTTCCTGATTGGATATATAAGAACCTTGCTGCAGGGAGTGAAATAGATGGAGGCTGTCGATGGGGCAATGGAAAGGAAGAGGAAGAAATGGTAAGGAAAATGATAATTGTGGGGTTGTGTTGTATTCAGACGTTGCCGGAGGAGAGGCCGTCGATGAGCGATGTGGTTGCCATGTTAGAAGGGAGTATTGATGGGCTACAAATTCCGCCGAAACCGACCTTGTTTGGTCCTCCTGAGCTGCCCCAACCTTCTTCTTCATCCACCTCATAA 1728 45.89 MKMKIIRNLFLISFIKFHFWACFSEEFETCEVNYNCGELVNITYPFWGNGRPRLCGLPEFELKCKNNRATTIQINSMEYIVLKIDQSDQIMRIARSDLFDDICPRSQIKTEITLSRPWFVNDRNFGNLRLWYNCLARNDSLDEYRFWCGWKREKEGRANFAFWVEMEMNFDMEGCEMNINVTMMNYRLGDGNNYTALVEKAVRGGFDVKYEAEYTVTCDGCKEAGGSCRRNATYCVCQDGNARPDEIEHIIKRYSTQTPKRYSYSKLKKMTDSFKNKLGQGGFSTVYKGRLPDGCEVAVKLLKESRKNSQDFINEVVSITRTSHVNIVTLLGFCYEHNKRALIYEYMPRGSLDKYIFEGGLEKSEVGLDWNVLYSIVMGVARGLEYLHRGCSTRILHFDIKPHNILLDDDFCPKISDFGLAKQCKARESHVSMTGAKGTVGFMAPEVIIKSFGKVSHKSDVYSYGMLVLEMVGERKSPLRVKSEEYFPDWIYKNLAAGSEIDGGCRWGNGKEEEEMVRKMIIVGLCCIQTLPEERPSMSDVVAMLEGSIDGLQIPPKPTLFGPPELPQPSSSSTS 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46895696 46898860 + Maker00036296 Lcy5g2410 634225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2410 575 Pfam Protein tyrosine and serine/threonine kinase 274 545 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2410 575 Gene3D Transferase(Phosphotransferase) domain 1 347 552 - -
Lcy5g2410 575 FunFam serine/threonine-protein kinase PBS1-like 242 346 - -
Lcy5g2410 575 FunFam PR5-like receptor kinase 347 557 - -
Lcy5g2410 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 395 407 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2410 575 Gene3D Phosphorylase Kinase; domain 1 246 346 - -
Lcy5g2410 575 Pfam Wall-associated receptor kinase galacturonan-binding 30 95 IPR025287 GO:0030247(InterPro)
Lcy5g2410 575 SMART serkin_6 272 545 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2410 575 PANTHER RUST RESISTANCE KINASE LR10-RELATED 200 564 IPR045874 GO:0004672(InterPro)
Lcy5g2410 575 ProSiteProfiles Protein kinase domain profile. 272 560 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2410 575 SUPERFAMILY Protein kinase-like (PK-like) 250 546 IPR011009 -
Lcy5g2410 575 ProSitePatterns Protein kinases ATP-binding region signature. 278 300 IPR017441 GO:0005524(InterPro)
Lcy5g2410 575 MobiDBLite consensus disorder prediction 555 575 - -
Lcy5g2410 575 Pfam Wall-associated receptor kinase C-terminal 171 240 IPR032872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0134 Lcy-Chr3:3409482 Lcy5g2410 Lcy-Chr5:46895696 3.13E-26 dispersed
Lcy3g0139 Lcy-Chr3:3506174 Lcy5g2410 Lcy-Chr5:46895696 3.40E-14 dispersed
Lcy3g0145 Lcy-Chr3:3627101 Lcy5g2410 Lcy-Chr5:46895696 8.68E-105 dispersed
Lcy3g0146 Lcy-Chr3:3700277 Lcy5g2410 Lcy-Chr5:46895696 7.04E-109 dispersed
Lcy5g2410 Lcy-Chr5:46895696 Lcy9g1781 Lcy-Chr9:42982230 4.28E-82 dispersed
Lcy5g2409 Lcy-Chr5:46860121 Lcy5g2410 Lcy-Chr5:46895696 2.24E-64 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65989 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2410 - - - 0.0