Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2419 GCACTCATTAAGGCGGCCATTAATAACAATCTCAGTTTTTTTTGCAGTTGCTCTGAGAAAGTTCAATTCCGTACCACTTCTCATTGGCTCTCTGGTTCTGGCGTCAACTTGACCGATCGATTCTCCCGTCGCTGGCGGAACGAGCTCATCGGCGCACTCGCCGAAGTGCCGGCGTTGTTGTTTGAATGCTTTCGATGGGGCTTTTGTCTTCTCTCTGTGCCTGCTTGCAGAAGAGACTTAAAGCAGCTAATTCAGCAGGTGCCGATGAAGCGGATGATGAAGATGTGTCTACGGACATCTTCTTTGAACTCAGTGCTCTGGAAATTGCTACTAATTTCTTTTCCGAGGCGAATAAGCTCGGCCATGGAGGGTTTGGGCCGGTGTACAAGGACTACCCATCCATCTGGATTTGGGTTGATGCCAAATGGTCAACAAGTAGCAGTTAAGAAGCTATCGGTAGATTCAAGACAAGGAGTGAGGCAATTTAGTAATGAAGTGAAACTTCTACTGAGAATTCAGCACAGAAATTTGGTCATTTTACTGGGCTGTTGTGTAGAAGGACCTGAAAAGATGCTTGTATATGAGTACCTGCCAAACAGAAGCCTCGATTACTTTCTCTTTGATAAAAAGAAGTCTCCATCCCTGGATTGGACAACGCGGTTCCATATAATTACAAGTATTGTGAGAGGTCTTCTCTACTTACATGAAGAATCTCCTGCAAGAATAATACACAGAGATATCAAAGCCAGTAACATATTACTAGATGAGCAATTGAATCCAAAAATCTCAGATTTTGGATTAGCACGACTTTTTCCCGGGGATGACACACATTTGAATACATTTAAGATCGCTGGTACTTATGGCTATATGGCTCCTGAATATGCACTTCATGGATATTTGTCTGTGAAGAGTGACGTTTTCAGTTTTGGCATCTTAGTATTAGAGATTGTTAGCGGAAGAAAAAATCATGATAATGGGCTCGGTATACAAAAGGCTGACCTCTTGGGATATGCATGGCGGCTTTACCAAGAAGGGAAGATTTTAGAATTAGTTGATCAAAGCCTAACAAAATGCAATGCAGATGAAGCAGCTATGTGCATTCAGTTGGGTTTGTTATGTTGTCAAGCGAGTGTTACAGATAGGCCTGATATGAATGCCATTCATCTCATGCTTTCCAGTGATTCGTTCACGTTGCCGCGACCTGGGAAACCTGGAATTCTTGGTCGAGGAGCGCGTAGGACAACTACCTCTACTTCAGCTTTCACCAATTCGAATACTGCTAGTACACAAACTGGCGTTACCAGAGCTTCTGCTGGTAGTAGTTTGGTAGAGGACTATTCAAGAAATTCCATATCTATTTCTTCTATTGATGAAGGCAGGTGA 1383 43.09 ALIKAAINNNLSFFCSCSEKVQFRTTSHWLSGSGVNLTDRFSRRWRNELIGALAEVPALLFECFRWGFCLLSVPACRRDLKQLIQQVPMKRMMKMCLRTSSLNSVLWKLLLISFPRRISSAMEGLGRCTRTTHPSGFGLMPNGQQVAVKKLSVDSRQGVRQFSNEVKLLLRIQHRNLVILLGCCVEGPEKMLVYEYLPNRSLDYFLFDKKKSPSLDWTTRFHIITSIVRGLLYLHEESPARIIHRDIKASNILLDEQLNPKISDFGLARLFPGDDTHLNTFKIAGTYGYMAPEYALHGYLSVKSDVFSFGILVLEIVSGRKNHDNGLGIQKADLLGYAWRLYQEGKILELVDQSLTKCNADEAAMCIQLGLLCCQASVTDRPDMNAIHLMLSSDSFTLPRPGKPGILGRGARRTTTSTSAFTNSNTASTQTGVTRASAGSSLVEDYSRNSISISSIDEGR 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46964286 46970199 + Maker00036836 Lcy5g2419 634234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2419 460 Pfam Protein tyrosine and serine/threonine kinase 142 388 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2419 460 Gene3D Transferase(Phosphotransferase) domain 1 197 397 - -
Lcy5g2419 460 MobiDBLite consensus disorder prediction 411 439 - -
Lcy5g2419 460 ProSiteProfiles Protein kinase domain profile. 114 391 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2419 460 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 138 406 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy5g2419 460 SMART serkin_6 124 396 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2419 460 Gene3D Phosphorylase Kinase; domain 1 122 196 - -
Lcy5g2419 460 MobiDBLite consensus disorder prediction 402 439 - -
Lcy5g2419 460 CDD STKc_IRAK 138 391 - -
Lcy5g2419 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2419 460 FunFam Cysteine-rich receptor-like protein kinase 41 197 397 - -
Lcy5g2419 460 SUPERFAMILY Protein kinase-like (PK-like) 140 407 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2419 Lcy-Chr5:46964286 Lcy6g1267 Lcy-Chr6:15708705 4.08E-92 dispersed
Lcy4g0748 Lcy-Chr4:8992338 Lcy5g2419 Lcy-Chr5:46964286 4.37E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65990 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2419 - - - 0.0