Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2422 ATGGCTGAGTTCACTGCAAACTTTCAGAGCTTAAAGCCTTCATCTTTTCCTCTAATGGAAATGGATTCCAACCAAAATCCAAGTCTTCTCCATAACCCAAATGTCAATTTTCTTGACAACATTCCTGTTTTGTTCAATGACAGTTTCTTTGGCAATCCAGCTAATCCAGCTCCCAGATTCCTGGAAAATTGGGGAGAAAATTTCCCAGCAATTTTCTGTCAAGCCAATCAGAACACTGCACCTGTTTTTGAGCCTGCAAATCCTTCTGGAAATGACCTCCATGGAAGCAAAAAAAGAAAGCTTGAAACTGATGCATCTGAAAGCAGCTCAGGCAACTCAACTCCTCAGCTTTCTGAAACTGGGATCAAGACTAAAAATAGCTCTGGAAAAGGAAAGCGGTCGAAAAAAGGCGACGAAAACGACGGCGAGAAGCCGAGAGAAGTGGTTCATGTTAGAGCCAGAAGAGGCCAAGCAACAGACAGTCACAGTGTAGCTGAAAGGATAAGAAGAGGAAAAATCAATGAAAGATTGAAATGCTTGCAAGACATTGTCCCTGGATGCTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATAAATTATGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCCATGAAACTCACAGCTGCAAGTTCCTATTATGACTTCAACTCAGACTCAGATTCTGCAGACAAACTGAAGGCAAAGGAAATGAGAGAGGGAAATGGAGGATTATTGGTTGCATCAACTCAACTTGGTCCATTTGATTTGAGCTTTGGTTCTTATTCAACATTGCCATTCAACAGCATATGA 825 41.33 MAEFTANFQSLKPSSFPLMEMDSNQNPSLLHNPNVNFLDNIPVLFNDSFFGNPANPAPRFLENWGENFPAIFCQANQNTAPVFEPANPSGNDLHGSKKRKLETDASESSSGNSTPQLSETGIKTKNSSGKGKRSKKGDENDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLKCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDSDSADKLKAKEMREGNGGLLVASTQLGPFDLSFGSYSTLPFNSI 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46990924 46992445 + Maker00036171 Lcy5g2422 634237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2422 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 225 IPR036638 GO:0046983(InterPro)
Lcy5g2422 274 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 232 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lcy5g2422 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 207 IPR011598 GO:0046983(InterPro)
Lcy5g2422 274 MobiDBLite consensus disorder prediction 81 165 - -
Lcy5g2422 274 MobiDBLite consensus disorder prediction 131 165 - -
Lcy5g2422 274 MobiDBLite consensus disorder prediction 106 127 - -
Lcy5g2422 274 SMART finulus 163 213 IPR011598 GO:0046983(InterPro)
Lcy5g2422 274 Pfam Helix-loop-helix DNA-binding domain 161 208 IPR011598 GO:0046983(InterPro)
Lcy5g2422 274 CDD bHLH_AtBPE_like 147 232 - -
Lcy5g2422 274 Gene3D - 154 225 IPR036638 GO:0046983(InterPro)
Lcy5g2422 274 FunFam transcription factor BEE 3-like 154 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0991 Lcy-Chr10:31817921 Lcy5g2422 Lcy-Chr5:46990924 2.79E-21 dispersed
Lcy5g2422 Lcy-Chr5:46990924 Lcy9g2004 Lcy-Chr9:44925824 8.25E-31 dispersed
Lcy12g0149 Lcy-Chr12:1815636 Lcy5g2422 Lcy-Chr5:46990924 6.27E-40 transposed
Lcy10g1491 Lcy-Chr10:39114287 Lcy5g2422 Lcy-Chr5:46990924 4.36E-09 wgd
Lcy2g0431 Lcy-Chr2:3603291 Lcy5g2422 Lcy-Chr5:46990924 6.02E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20178 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2422 - - - 0.0