Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2445 ATGGCTTCTCTCCTCTCTTCTTCTCCCTCCAAAGCGCTTCTACTTTCATTCTTCTTCCTCTTTCTGTCCTGCCACTTCTTCTCTGCAACCTGCACTGAATTCCTCGTCGGTGATGAAGATGGCTGGGCTGTCCCTAAACCAAAAGAAGCTGATCGATACAACAAATGGGCCTCCCACAACAGATTCAATGTTAATGACACCGTCCATTTCAAGTACGAGAAAGATTCAGTGATGGTGGTGACAGAGGAAGAGTACAAGCACTGCCTTTCCTCAAAGCCTCTGTTCTTCGACAACAATGGCGACACAGTGGTGAGACTTGACAGAGCAGGGCTGTTCTATTTCATCAGTGGAGTTTCAGGGCACTGCGAGAAAGGGCAGAGGATGATAATCAAAGTGTTGGAACCTCTCAGCCCGCCTCAGCCACCCACTGCTCCACCTCAGAAGAAGAACAGTGCAGTCTCTGTTTCGTCTCCAATGCTTGGAATGTTGTTTTTGTTCTTTGTTTCGTTTCCATTCATTTGA 522 47.32 MASLLSSSPSKALLLSFFFLFLSCHFFSATCTEFLVGDEDGWAVPKPKEADRYNKWASHNRFNVNDTVHFKYEKDSVMVVTEEEYKHCLSSKPLFFDNNGDTVVRLDRAGLFYFISGVSGHCEKGQRMIIKVLEPLSPPQPPTAPPQKKNSAVSVSSPMLGMLFLFFVSFPFI 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47214827 47215873 + Maker00036766 Lcy5g2445 634260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2445 173 CDD OsENODL1_like 32 133 IPR041846 -
Lcy5g2445 173 Gene3D - 30 136 IPR008972 -
Lcy5g2445 173 Pfam Plastocyanin-like domain 49 126 IPR003245 GO:0009055(InterPro)
Lcy5g2445 173 FunFam Early nodulin-like protein 1 31 136 - -
Lcy5g2445 173 ProSiteProfiles Phytocyanin domain profile. 32 134 IPR003245 GO:0009055(InterPro)
Lcy5g2445 173 SUPERFAMILY Cupredoxins 31 133 IPR008972 -
Lcy5g2445 173 PANTHER BLUE COPPER PROTEIN 21 141 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1876 Lcy-Chr10:42934763 Lcy5g2445 Lcy-Chr5:47214827 7.71E-40 dispersed
Lcy3g2039 Lcy-Chr3:47415434 Lcy5g2445 Lcy-Chr5:47214827 5.41E-12 dispersed
Lcy5g2445 Lcy-Chr5:47214827 Lcy6g1385 Lcy-Chr6:20193381 2.00E-20 dispersed
Lcy5g2445 Lcy-Chr5:47214827 Lcy8g1549 Lcy-Chr8:42135098 5.02E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2445 - - - 0.0