Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2445 ATGGCTTCTCTCCTCTCTTCTTCTCCCTCCAAAGCGCTTCTACTTTCATTCTTCTTCCTCTTTCTGTCCTGCCACTTCTTCTCTGCAACCTGCACTGAATTCCTCGTCGGTGATGAAGATGGCTGGGCTGTCCCTAAACCAAAAGAAGCTGATCGATACAACAAATGGGCCTCCCACAACAGATTCAATGTTAATGACACCGTCCATTTCAAGTACGAGAAAGATTCAGTGATGGTGGTGACAGAGGAAGAGTACAAGCACTGCCTTTCCTCAAAGCCTCTGTTCTTCGACAACAATGGCGACACAGTGGTGAGACTTGACAGAGCAGGGCTGTTCTATTTCATCAGTGGAGTTTCAGGGCACTGCGAGAAAGGGCAGAGGATGATAATCAAAGTGTTGGAACCTCTCAGCCCGCCTCAGCCACCCACTGCTCCACCTCAGAAGAAGAACAGTGCAGTCTCTGTTTCGTCTCCAATGCTTGGAATGTTGTTTTTGTTCTTTGTTTCGTTTCCATTCATTTGA 522 47.32 MASLLSSSPSKALLLSFFFLFLSCHFFSATCTEFLVGDEDGWAVPKPKEADRYNKWASHNRFNVNDTVHFKYEKDSVMVVTEEEYKHCLSSKPLFFDNNGDTVVRLDRAGLFYFISGVSGHCEKGQRMIIKVLEPLSPPQPPTAPPQKKNSAVSVSSPMLGMLFLFFVSFPFI 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47214827 47215873 + Maker00036766 Lcy5g2445 634260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2445 173 CDD OsENODL1_like 32 133 IPR041846 -
Lcy5g2445 173 Gene3D - 30 136 IPR008972 -
Lcy5g2445 173 Pfam Plastocyanin-like domain 49 126 IPR003245 GO:0009055(InterPro)
Lcy5g2445 173 FunFam Early nodulin-like protein 1 31 136 - -
Lcy5g2445 173 ProSiteProfiles Phytocyanin domain profile. 32 134 IPR003245 GO:0009055(InterPro)
Lcy5g2445 173 SUPERFAMILY Cupredoxins 31 133 IPR008972 -
Lcy5g2445 173 PANTHER BLUE COPPER PROTEIN 21 141 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2445 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1876 Lcy-Chr10:42934763 Lcy5g2445 Lcy-Chr5:47214827 7.71E-40 dispersed
Lcy3g2039 Lcy-Chr3:47415434 Lcy5g2445 Lcy-Chr5:47214827 5.41E-12 dispersed
Lcy5g2445 Lcy-Chr5:47214827 Lcy6g1385 Lcy-Chr6:20193381 2.00E-20 dispersed
Lcy5g2445 Lcy-Chr5:47214827 Lcy8g1549 Lcy-Chr8:42135098 5.02E-25 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy9g1218 . 11 140 Phytocyanin Superfamily AT3G20570 58.0 1.9e-37 153.3
Lcy5g2445 . 10 161 Phytocyanin Superfamily AT1G48940 51.6 9.8e-38 154.1
Lcy10g0682 . 28 174 Phytocyanin Superfamily AT3G01070 52.7 9.2e-38 154.1
Lcy10g0682 . 29 184 Phytocyanin Superfamily AT5G15350 53.2 1.1e-46 183.7
Lcy5g2445 . 7 134 Phytocyanin Superfamily AT3G18590 58.1 8.8e-37 151.0
Lcy8g1549 . 16 130 Phytocyanin Superfamily AT4G32490 58.3 1.0e-36 151.0
Lcy8g1549 . 16 130 Phytocyanin Superfamily AT4G32490 58.3 1.0e-36 151.0
Lcy5g2445 . 7 134 Phytocyanin Superfamily AT3G18590 58.1 8.8e-37 151.0
Lcy5g2445 . 10 161 Phytocyanin Superfamily AT1G48940 51.6 9.8e-38 154.1
Lcy9g1218 . 11 140 Phytocyanin Superfamily AT3G20570 58.0 1.9e-37 153.3
Lcy10g0682 . 28 174 Phytocyanin Superfamily AT3G01070 52.7 9.2e-38 154.1
Lcy10g0682 . 29 184 Phytocyanin Superfamily AT5G15350 53.2 1.1e-46 183.7
Lcy8g2041 . 48 263 Phytocyanin Superfamily AT1G08500 54.1 4.6e-56 215.3
Lcy2g1118 . 29 144 Phytocyanin Superfamily AT2G27035 57.8 6.9e-38 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000973 5 4 1 1 2 2 4 2 2 3 3 2 3 3 3 3 2 2 5 3 2 4 3 3 2 3 2 3 2 3 82