Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2449 ATGGCTGGTGGTAGAAGAAGAAGAAGAAGGCAGCATTTCAGAAGGATTCATGCCTTTCCTTGTGGGAGAGCTTCTTTCAAAGATGAGCACTCCTTAATTGGAGGGCCAGGGTTTTCAAGGGTAGTTTACTGTAACGATCCAGATAGTTTTGAGGCCAGTCTTCTCAACTATGGAGGCAATTATGTCAAAACTTCAAAGTATACCATTGCTTCATTCGTCCCCAAATCGTTGTTTGAGCAATTCAGAAGGGTTGCCAACTTGTATTTCCTCCTTTGTGCTTTGCTTTCCTTTAGCCCTCTTTCGCCGTATTCGCCGGTCAGTAATGTTCTTCCTCTTGTTGTTGTTATTGGAGTCACCATGGCCAAGGAGGCTCTTGAAGATTGGAGGAGAACCAAACAGGATATGGAGATGAATAACAGGAAGGTGAAAGTACATATTCGAGATGGCGAGTTTGTCGAGACTAAATGGATGGACTTGAAGGTTGGAGATATAGTTAAAGTGGAAAAGGATGAATTCTTCCCTGCTGATCTCATTTTACTTTCGTCGAGTTATGAGGAAGCGATTTGCTACGTCGAGACGATGAACCTTGATGGGGAAACAAATTTGAAACTGAAAAACGCATTAGAAGCAAGCTCAAACTTACACGAAGATTCGAGCTTCCAGAATTTCAAGGCTATAATAAAATGTGAAGACCCCAATGCAAATTTGTATTCCTTTGTAGGCAGTATGGAGCTTGAAGAGCAGCAACACCCCCTTAGCCCTCAACAGCTTCTTCTTCGGGACTCGAAGCTTCGGAACACGGATTTTATATATGGGGTGGTGATCTTTACAGGTCATGATACAAAGGTTATTCAGAACTCAACTGCTCCTCCTTCCAAGAGAAGCAAGATTGAGAAGAGGATGGATAAGATTGTGTTCTTCCTGTTTGCTGTCTTGGTTTTGATATCAATTGCTGGATCAATTTTCTTCGGAGTTTCGACTAGCGACGATATAGAAAATGGAAGAATTACGAGATGGTACCTTAGGCCAGATGATACCACAATATACTACAACCCCAAAGAAGCTCCAGTTGCAGCAATATTGCAATTTTTGACTGCTCTTATGCTTTTTAGCTATTTGATTCCCATATCATTGTATGTGTCTATTGAAATTGTCAAAGTTCTGCAGAGTGCCTTCATCAACCAAGATAGACATATGTATCATGAGGAAACTGATAAGCCAGCTCATGCCCGTACCTCAAATTTGAATGAAGAGCTTGGCCAAGTTGACACCATACTTTCTGATAAAACTGGGACATTGACCTGCAATTCGATGGAGTTTATCAAGTGTTCGGTGGGCGGGACTGCTTACGGGCGAGGAATTACAGAAGTAGAGAGAGCTCTTGCAAGAAGAAAGGAGTCAACTTTACCTGATAAATTAGAGGCCAAAGATGCACGTCTTAGCAGCGAAAAACCATCCATTAAGGGGTTCAATTTCAAGGACGAAAGAATAATGGACGGTAATTGGGTGAAGGAGCCTCGAGCCGATGTAATCCAGAAGTTCCTGCAGCTACTGGCCATCTGCCATACTGCATTGCCAGAAATTGATGAGGAAACTGGAAAAATTTCATATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCAGCAAGAGAATTTGGTTTTGAATTCTATGAAAGGACTCAGACAAGCATTTCATTGCGAGAGTTCGACCCGGCCTCTGCGAAAATAGTCGAAAGATCATATCAACTACTGGATATTTTGGAATTTAATAGCACAAGAAAGAGGATGTCTGTGATTATAAGAAATGAAAAGGGACAGCTACTACTACTTTGTAAAGGGGCTGACAGTGTTATGTTTGAAAGACTGGCAAAGAATGGAAGTGAGTTTGAAGAACAAACAAAGGTGCAGATTAACGAGTACGCCGATGCTGGTTTAAGAACTTTGGTGCTAGCGTATCGTGAGCTGAAGGAGGAGGAATTCAATACATTTCATCAAGAATTCATCAAAGCCAAAAACACAGTGAGCACAGATCGCGACGACATAATCGATCAGTTAACAGAAAGTGTTGAGAAAGATTTGATTCTTCTTGGTGCTACAGCAGTTGAAGATAAGCTTCAAAATGGGGTCCCTGAGTGCATAGACAAACTTGCTCAGGCTGGAATTAAAATATGGGTTCTGACTGGAGATAAAATGGAAACAGCCATCAACATTGGCTTTGCTTGTAGTTTACTTAGACAAGGAATGAGGCAAATAATTATCAGCTCAGAGACTCCGGAAGGAAAAGCTTTGGACAAAGTCGAAGACATTCACAAATCTGCAGCTATCAAGGCGTTTAAGGCAAGTGTAACTCAGCAAATAACTGATGCAAAAGCATTACTTGCGACTTCGAGCGAAACCCCGGAAGCATTGGCTTTGATAATTGATGGAAAATCCCTCACCTATGCTCTGGAGGATGATGTGAAGGACCTATTTTTGGAGCTTGCCATTGGTTGTGCTTCAGTTATATGCTGCAGATCATCTCCAAAACAGAAAGCACAAGTTACCCAATTGGTTAAGGTTAAAACAGGCAGCACCACTCTAGCAGTTGGTGATGGTGCAAATGATGTCGGAATGCTCCAAGAAGCAGATATTGGGATTGGTATTAGCGGCGTCGAAGGGATGCAGGCAGTCATGTCAAGTGACATTGCAATAGCACAGTTTCGATATTTGGAGCGGCTGCTTCTTGTGCATGGACATTGGTGTTACAGAAGGATCTCTTCCATGATTTGCTATTTCTTCTACAAGAACATTGTTTTTGGGTTCACTCTCTTCTTCTTTGAGTTGTACGCATCATTCTCCGGCCAATCTGTATACAATGACTGGTTCCTTTCGCTATACAATGTCTTCTTTACTTCTCTCCCTGTGATCGCATTGGGAGTATTCGATCAAGACGTCTCGTCCCGGTACTGTCTCAAGTTCCCACTTTTATACCAAGAAGGCGTCCAAAATGTCTTATTTAGTTGGGTTCGAGTTATCGGCTGGGTGTTCAACGGGCTACTAAGCTCTGTCATCATCTTCTTCTTTTGTATCGGGGCAATGGATCATCAAGCTTTCCGCAGCAGCGGAGAGGTCGTCGGGTTGGAAATTCTCGGCGCCACCATGTACACTTGTGTTGTTTGGGTTGTAAACTGTCAAATGGCATTGTCCATCAGTTACTTCACATACATTCAACATCTCTTCATCTGGGGCAGCATCATTCTCTGGTACTTGTTCCTCATGGCATATGGAGCTATAAATCCAACCATATCAACCACTGCATTTCAGGTCTTCATCGAGGCCTGCGCCCCGGCACCGTCGTTTTGGATCCTCACACTATTAGCTCTGGGAGCTTCCCTTCTCCCATACTTCATCTACGCATCGATCCAAATGCGGTTCTTCCCAATGTACCATCAAATGATTCAATGGATAAAGGCAGATGGACAGTCAAACGATCCAGAATACTGTCAAGTAGTGAGACAGAGATCACTTCGACACACGACCGTCGGTTACACAGCTCGGTTCGAAGCATCGAAGCATTTTGAAGAAATCCCAGAAATCAACAGCCATTAG 3594 42.93 MAGGRRRRRRQHFRRIHAFPCGRASFKDEHSLIGGPGFSRVVYCNDPDSFEASLLNYGGNYVKTSKYTIASFVPKSLFEQFRRVANLYFLLCALLSFSPLSPYSPVSNVLPLVVVIGVTMAKEALEDWRRTKQDMEMNNRKVKVHIRDGEFVETKWMDLKVGDIVKVEKDEFFPADLILLSSSYEEAICYVETMNLDGETNLKLKNALEASSNLHEDSSFQNFKAIIKCEDPNANLYSFVGSMELEEQQHPLSPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVIQNSTAPPSKRSKIEKRMDKIVFFLFAVLVLISIAGSIFFGVSTSDDIENGRITRWYLRPDDTTIYYNPKEAPVAAILQFLTALMLFSYLIPISLYVSIEIVKVLQSAFINQDRHMYHEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVGGTAYGRGITEVERALARRKESTLPDKLEAKDARLSSEKPSIKGFNFKDERIMDGNWVKEPRADVIQKFLQLLAICHTALPEIDEETGKISYEAESPDEAAFVIAAREFGFEFYERTQTSISLREFDPASAKIVERSYQLLDILEFNSTRKRMSVIIRNEKGQLLLLCKGADSVMFERLAKNGSEFEEQTKVQINEYADAGLRTLVLAYRELKEEEFNTFHQEFIKAKNTVSTDRDDIIDQLTESVEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMRQIIISSETPEGKALDKVEDIHKSAAIKAFKASVTQQITDAKALLATSSETPEALALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKAQVTQLVKVKTGSTTLAVGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFFELYASFSGQSVYNDWFLSLYNVFFTSLPVIALGVFDQDVSSRYCLKFPLLYQEGVQNVLFSWVRVIGWVFNGLLSSVIIFFFCIGAMDHQAFRSSGEVVGLEILGATMYTCVVWVVNCQMALSISYFTYIQHLFIWGSIILWYLFLMAYGAINPTISTTAFQVFIEACAPAPSFWILTLLALGASLLPYFIYASIQMRFFPMYHQMIQWIKADGQSNDPEYCQVVRQRSLRHTTVGYTARFEASKHFEEIPEINSH 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47270391 47276850 + Maker00036552 Lcy5g2449 634264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2449 1197 Pfam Phospholipid-translocating P-type ATPase C-terminal 892 1142 IPR032630 -
Lcy5g2449 1197 FunFam Phospholipid-transporting ATPase 698 904 - -
Lcy5g2449 1197 SFLD C1.7: P-type atpase like 408 915 - -
Lcy5g2449 1197 FunFam Phospholipid-transporting ATPase 540 698 - -
Lcy5g2449 1197 Gene3D - 117 288 - -
Lcy5g2449 1197 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 35 1146 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Lcy5g2449 1197 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Lcy5g2449 1197 PRINTS P-type cation-transporting ATPase superfamily signature 864 883 - -
Lcy5g2449 1197 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Lcy5g2449 1197 Gene3D - 544 698 IPR023299 GO:0000166(InterPro)
Lcy5g2449 1197 Pfam Cation transport ATPase (P-type) 520 624 - -
Lcy5g2449 1197 NCBIfam phospholipid-translocating P-type ATPase 57 1149 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lcy5g2449 1197 SUPERFAMILY Calcium ATPase, transmembrane domain M 49 1142 IPR023298 -
Lcy5g2449 1197 SUPERFAMILY HAD-like 421 919 IPR036412 -
Lcy5g2449 1197 Pfam E1-E2 ATPase 137 321 - -
Lcy5g2449 1197 SUPERFAMILY Calcium ATPase, transduction domain A 144 285 IPR008250 -
Lcy5g2449 1197 CDD P-type_ATPase_APLT_Dnf-like 59 1024 - -
Lcy5g2449 1197 SFLD p-type atpase 408 915 IPR044492 -
Lcy5g2449 1197 Pfam Phospholipid-translocating ATPase N-terminal 42 108 IPR032631 -
Lcy5g2449 1197 Gene3D - 699 904 IPR023214 -
Lcy5g2449 1197 Coils Coil 118 138 - -
Lcy5g2449 1197 FunFam Phospholipid-transporting ATPase 118 288 - -
Lcy5g2449 1197 NCBIfam HAD-IC family P-type ATPase 109 224 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy5g2449 1197 NCBIfam HAD-IC family P-type ATPase 830 946 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy5g2449 1197 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 489 700 IPR023299 GO:0000166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0833 Lcy-Chr10:25521381 Lcy5g2449 Lcy-Chr5:47270391 0 dispersed
Lcy1g1623 Lcy-Chr1:16568295 Lcy5g2449 Lcy-Chr5:47270391 1.88E-206 transposed
Lcy3g2224 Lcy-Chr3:49065099 Lcy5g2449 Lcy-Chr5:47270391 0 transposed
Lcy4g0675 Lcy-Chr4:8154723 Lcy5g2449 Lcy-Chr5:47270391 5.44E-145 transposed
Lcy7g0228 Lcy-Chr7:1985149 Lcy5g2449 Lcy-Chr5:47270391 0 transposed
Lcy5g2449 Lcy-Chr5:47270391 Lcy7g0397 Lcy-Chr7:3379038 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2449 K01530 - csv:101209427 2192.54