Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2467 ATGGCGACAAAATCCGAGAAATTCTCGGCGGATTTTGTGATGGGTGGGGTTGCTGCGATTGTTGCAAAAAGTGCAGCGGCGCCGATTGAGAGGGTCAAGCTTTTGTTGCAGAATCAGGGAGAGATGATCAAGCGAGGGCATCTCAAGAAGCCATATCTGGGCATTCATGACTGTTTCGGAAGAGTCTTGAGAGAAGAAGGGATGTTGTCGCTTTGGAGGGGAAATCAGGCTAACGTTATTCGATATTTCCCCACTCAGGCTTTCAACTTTGCGTTCAAAGGTTACTTCAAAACAAAATTTGGGCGCTCAAAAGAGAAGGATGGATACCTTAAGTGGTTTGCTGGAAATGTTGCTTCAGGAAGTGCTGCAGGAGCAACTACATCTTTGTTTCTGTATCATTTGGATTATGCACGCACTCGACTAGGCACAGATGCAATGGACTGTGGGAGTAACAGTCAGCGGCAGTTTAAAGGGCTGCTCGATGTCTACAGAAAAACCTTGTCAAGTGATGGAATTGTCGGTCTATACCGAGGATTTAGTGTTTCAATCGTGGGAATTACTCTGTACAGAGGCATGTATTTTGGGATTTACGACACTTTAAAGCCTCTGGTTTTGGTTGGAAACTTTGAGGGAAACTTTTTTGCTAGTTTCTTATTGGGGTGGAGTATCACAACCTGTTCTGGTGTATGTGCTTATCCTTTCGACACCCTGCGACGGAGAATGATGCTTACCTCTGGACAAACAGTGAAGTACCGTAGCGCTTTGCATGCATTTTCGGAGATCATTCGCCTCGAGGGTTTTACTGCTCTTTTTCGAGGAGTCACTGCCAATATGCTTGTTGGTGTTGCAGGGGCTGGGGTTCTTGCAGGTTATGATCAACTGCACGAAATTGCCTGTCGACATGGTTACTCATTTGGGCAACCTCAAATAGCCTCAAAATGA 942 45.65 MATKSEKFSADFVMGGVAAIVAKSAAAPIERVKLLLQNQGEMIKRGHLKKPYLGIHDCFGRVLREEGMLSLWRGNQANVIRYFPTQAFNFAFKGYFKTKFGRSKEKDGYLKWFAGNVASGSAAGATTSLFLYHLDYARTRLGTDAMDCGSNSQRQFKGLLDVYRKTLSSDGIVGLYRGFSVSIVGITLYRGMYFGIYDTLKPLVLVGNFEGNFFASFLLGWSITTCSGVCAYPFDTLRRRMMLTSGQTVKYRSALHAFSEIIRLEGFTALFRGVTANMLVGVAGAGVLAGYDQLHEIACRHGYSFGQPQIASK 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47412620 47415273 + Maker00036702 Lcy5g2467 634282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2467 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 111 203 IPR018108 -
Lcy5g2467 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 6 99 IPR018108 -
Lcy5g2467 313 PRINTS Adenine nucleotide translocator signature 85 97 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Lcy5g2467 313 PRINTS Adenine nucleotide translocator signature 111 124 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Lcy5g2467 313 PRINTS Adenine nucleotide translocator signature 216 232 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Lcy5g2467 313 PRINTS Adenine nucleotide translocator signature 8 20 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Lcy5g2467 313 PRINTS Adenine nucleotide translocator signature 52 73 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Lcy5g2467 313 FunFam ADP,ATP carrier protein ER-ANT1 9 303 - -
Lcy5g2467 313 Pfam Mitochondrial carrier protein 6 102 IPR018108 -
Lcy5g2467 313 Pfam Mitochondrial carrier protein 113 204 IPR018108 -
Lcy5g2467 313 Pfam Mitochondrial carrier protein 212 298 IPR018108 -
Lcy5g2467 313 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 6 304 IPR002113 GO:0005471(InterPro)|GO:0005471(PANTHER)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Lcy5g2467 313 SUPERFAMILY Mitochondrial carrier 6 294 IPR023395 -
Lcy5g2467 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 297 IPR018108 -
Lcy5g2467 313 PRINTS Mitochondrial carrier protein signature 126 144 IPR002067 GO:0055085(InterPro)
Lcy5g2467 313 PRINTS Mitochondrial carrier protein signature 11 24 IPR002067 GO:0055085(InterPro)
Lcy5g2467 313 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085(InterPro)
Lcy5g2467 313 PRINTS Mitochondrial carrier protein signature 24 38 IPR002067 GO:0055085(InterPro)
Lcy5g2467 313 PRINTS Mitochondrial carrier protein signature 220 242 IPR002067 GO:0055085(InterPro)
Lcy5g2467 313 PRINTS Mitochondrial carrier protein signature 176 194 IPR002067 GO:0055085(InterPro)
Lcy5g2467 313 Gene3D Mitochondrial carrier domain 9 303 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0669 Lcy-Chr4:8108333 Lcy5g2467 Lcy-Chr5:47412620 1.43E-134 dispersed
Lcy5g2467 Lcy-Chr5:47412620 Lcy9g1440 Lcy-Chr9:39387676 1.00E-42 dispersed
Lcy5g2467 Lcy-Chr5:47412620 Lcy3g2112 Lcy-Chr3:48108678 1.52E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2467 K05863 - csv:101207715 530.02