Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy5g2470 | ATGGGGAGAGGGAGAGTGCAATTGAAGAGGATTGAGAACAAGATTAACAGACAAGTGACTTTCTCAAAAAGAAGGTCTGGTTTGCTGAAGAAAGCTCATGAGATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACCAAAGGAAAGCTCTTTGAATACTTCACTGATTCTTGCATGGAGAAAATCCTTGAGCGTTATGAAAGGTATTCTTATGCAGAGAGGAGACTTGTTGCAAATGAAAACCAATCAAATGGAAACTGGACTCTTGAACATGCAAAGCTTAAAGCCAGAATAGAAGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGATTCATTGAGTCTAAAAGAGCTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGTACACTTGAAATTACTTTCTCCTCAGCTTTTTTTCCTTTTTCTTTTTGGCCCCACCCCAGTACTCTATAGAGATTTCAGGTGCCCAACTAGAGATATGAATGGTTTTTTCTATCCATGCAATAGTTCGACTAATTTCACGGGAGATCTGCCTAGCCCTACAACATTTGGTTGTCGAGAAACTTTTCAAGCTCAAGCCATCATGTATAAACATCAAAGAGACAAGGCCCTACAAGAGCAAAACAACATATTAGCCAAGAAGATAAAGGAGAAGGAGAAAGCACAAGCTCAAAATCCACCATTGGAGCAGCAGCAGCAGCATAATAGCCATGCCATTGATTCTTCCCCACTTCTCTTACCTCAGCCATTCCAATCTCTTAACATGAGTTGTCCTTACCCAACACATGGCACGGAAGAGGAAGACGCCGCTGCCAACCACGACAGATCCGGCGCCCTCCTGCCGCCGTGGCTGCTCCGCCACCACCTTGGTGAATAA | 966 | 42.55 | MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYFTDSCMEKILERYERYSYAERRLVANENQSNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESISELQKKVHLKLLSPQLFFLFLFGPTPVLYRDFRCPTRDMNGFFYPCNSSTNFTGDLPSPTTFGCRETFQAQAIMYKHQRDKALQEQNNILAKKIKEKEKAQAQNPPLEQQQQHNSHAIDSSPLLLPQPFQSLNMSCPYPTHGTEEEDAAANHDRSGALLPPWLLRHHLGE | 321 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 47435771 | 47442442 | - | Maker00036476 | Lcy5g2470 | 634285 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy5g2470 | 321 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g2470 | 321 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g2470 | 321 | Coils | Coil | 231 | 254 | - | - | |
| Lcy5g2470 | 321 | ProSiteProfiles | K-box domain profile. | 88 | 251 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Lcy5g2470 | 321 | MobiDBLite | consensus disorder prediction | 254 | 275 | - | - | |
| Lcy5g2470 | 321 | FunFam | MADS-box transcription factor MADS-MC | 13 | 86 | - | - | |
| Lcy5g2470 | 321 | Pfam | K-box region | 83 | 159 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Lcy5g2470 | 321 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g2470 | 321 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g2470 | 321 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g2470 | 321 | SUPERFAMILY | SRF-like | 2 | 91 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g2470 | 321 | Coils | Coil | 122 | 145 | - | - | |
| Lcy5g2470 | 321 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Lcy5g2470 | 321 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 252 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Lcy5g2470 | 321 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g2470 | 321 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g2470 | 321 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g2470 | 321 | MobiDBLite | consensus disorder prediction | 248 | 275 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g1638 | Lcy-Chr13:35318237 | Lcy5g2470 | Lcy-Chr5:47435771 | 3.43E-29 | dispersed | |
| Lcy1g0849 | Lcy-Chr1:7257480 | Lcy5g2470 | Lcy-Chr5:47435771 | 1.59E-33 | dispersed | |
| Lcy3g0344 | Lcy-Chr3:10943559 | Lcy5g2470 | Lcy-Chr5:47435771 | 5.43E-73 | dispersed | |
| Lcy5g2470 | Lcy-Chr5:47435771 | Lcy6g0210 | Lcy-Chr6:1886860 | 2.77E-43 | dispersed | |
| Lcy9g1664 | Lcy-Chr9:41832118 | Lcy5g2470 | Lcy-Chr5:47435771 | 4.70E-06 | dispersed | |
| Lcy5g2470 | Lcy-Chr5:47435771 | Lcy5g2471 | Lcy-Chr5:47447574 | 2.05E-44 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 20186 | None | None | None | None | Lcy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy5g2470 | K09264 | - | csv:101207225 | 280.411 |