Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2471 ATGGGCAGAGGAAGAGTTGAGTTGAAGAGGATTGAGAACAAAATTAACAGGCAGGTCACTTTTGCCAAGAGGAGAAATGGCTTGCTTAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCATCTTCTCTAATCGTGGCAAGCTCTTTGAGTTTTCTAGTGGCTCTAGCATGATGAAGACGTTGGAGAAATATCGAAGGTGTAGTTATGGTGTACTGGATGCTGCCCGCCAAATAAATGAGAGTCGGCAGCCACAAAACTTTGATGATTACTTGAACCTAAAAGCCACAGTTGAGTTCATGCAACAATCTCAAAGAAACCTTTTGGGGGAAGATTTAGGGCCATTGAATACCAAGGAACTTGAGCAACTTGAAAATCAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGGAACATATGCTTGTTGAAGACAACCGAGGTTTAAGAAAGAAGCTGGAAGAAAGCAACGCACAAGTAGCAGCAGCTGCCGCCACCTCCGCCGCATGGGGCTGGGGAGGCGGCGGCACCGCGGTCGGAGGCCACAGCATGGAGTATCCCAGCCGCGTTGCTTCACAATCAGAGGCCTTTTTCCACCCCATAATACAACCCACTCCCACTTTACAAATTGGGTACAATCCTCTTGGTTCAGTAGGGTTCAATAACAATGTTGGACCTCCATCCCAAAATGCCAATGGTTTTCACCTTGGCTGGATGCTTTAA 741 46.42 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFSSGSSMMKTLEKYRRCSYGVLDAARQINESRQPQNFDDYLNLKATVEFMQQSQRNLLGEDLGPLNTKELEQLENQLETSLERIRSTKEHMLVEDNRGLRKKLEESNAQVAAAAATSAAWGWGGGGTAVGGHSMEYPSRVASQSEAFFHPIIQPTPTLQIGYNPLGSVGFNNNVGPPSQNANGFHLGWML 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47447574 47451901 - Maker00036897 Lcy5g2471 634286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2471 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g2471 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g2471 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g2471 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g2471 246 Gene3D - 13 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g2471 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g2471 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g2471 246 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g2471 246 ProSiteProfiles K-box domain profile. 89 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy5g2471 246 FunFam MADS-box transcription factor 1 13 86 - -
Lcy5g2471 246 Coils Coil 123 146 - -
Lcy5g2471 246 Pfam K-box region 88 162 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy5g2471 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 183 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy5g2471 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g2471 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy5g2471 246 Coils Coil 152 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1265 Lcy-Chr3:38403839 Lcy5g2471 Lcy-Chr5:47447574 1.21E-24 dispersed
Lcy3g1266 Lcy-Chr3:38446396 Lcy5g2471 Lcy-Chr5:47447574 5.24E-67 dispersed
Lcy5g2110 Lcy-Chr5:44175326 Lcy5g2471 Lcy-Chr5:47447574 5.00E-37 dispersed
Lcy5g2471 Lcy-Chr5:47447574 Lcy6g0210 Lcy-Chr6:1886860 5.56E-42 dispersed
Lcy5g2470 Lcy-Chr5:47435771 Lcy5g2471 Lcy-Chr5:47447574 2.05E-44 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20187 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2471 K09264 - csv:101204197 347.821