Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2474 ATGGAGTTGAAGAGTTCAAACTGCCTGATATTTCTTATGCAAGTCACCCAGCAGCAGAACATATCGGCATACGACTCGTTGGACCCGAATGGAAACATTGAGATCAAATGGGATGTCATGTACTGGACTGGAGATGGTTATGTGGCAACTGTGACAATAACCAACTCTCAGATGTATCGACATATCACGAGCCCTGGATGGACCTTGGGATGGGAATGGGCAAAGAATGAGATCATTTGGTCCATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTAGAGAAACCATCCCACACAGTTGCAAAAGAGATCCAACAGTGGTTGACTTGCTTCCAGGTGTTCCTTACAACAAACAGGTTGCTAGGTGCTGCAAAGGTGGTGTTTTGACAGCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTCCAATTGACTGTTGGTCACTCTGGTAGTTCAAATAAAACAGTGAGACTTCCCAAGAATTTCACCTTGTATGGTCCAGGGTTAGGTTACACATGCGGCCCGGCAACGATTGCTCCGACGTCAGCTTTCTTCTCAACTGGTGGTCGTCGAAAAACTAATGCATTGATGACTTGGAATGTGACATGCACTTACTCGCAGTTTCTTGCTTCTGAAACGCCAACCTGCTGTGTCTCCATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTAAAGAATGTGCTTGTGGCTGCCAAGACAGAACAGCATGTATCCTGACCGAATCGGACCTTCAAAGCGTTACCGCATTGAATGCACCTACAAATGACAGTGGATCATTGCTGCAGTGCACGGCACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATACTGGCGGGTGAAGATAACTATCAGCAATTTAAACTATGAACTAAACTACACACAATGGACACTTGTTGTCGAGCACCCCAATTTCAACAACACAATGGAAGTTTATAGCTTTGTCTATAAGCCACTCACCCCCTTCATCTCCAAGAATGACACAGCTCTGTTCTATGGCGTAAAATCTTTCAATGACGTGCTACTTCAAGCAGGGCCAAATGGAAACGTTCACTCTGAGATAATTTTTCAGAAGGATTCAACATTTACATTCAAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTAAGCAGAATGGAGAACCATCAATCAGTGAATCGAAGATCGCAAATGCCAAAAAGAAGCAGAGAAATTTTGCCAGAAATTCGAAAGAGCAAGCAGAGATGGAAGGCAGCTTCGAGCAGACCCTTCAAGATGGGAAGCTTTATAGACAAGCTGCAAGTGCTGCTGCTTCAGCTACAATGACGCCACTGAATGTTGATATCCCGCCGAATAAGCTTCTGGAGCTCGTTGCAAAGGGTCTTGCAGTGGAGAAAGATGAGATGTTAAGAGGGAATCCTGCTTCTGCATTGTATGAATTTGGTTCATCAGTGCCCACTACATTTGGGTCTACACAGGCCTCTCGTGCTTCTGCCATCGACTTCAGTGCTGCGCAGGATACAAAAGGTTCGTCGAAGAGTTTTCCAAAGCACGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGGTTCAGTGCTGATGGGAGATTTGTTGCCACTGGAAGCGCGGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGAAGCAAAAGATGGTCCTGTCCGACCTGTTATAAGGACATTTTACGATCACATTCAACCAATAAATGATTTGGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACAATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTCAGAGTTATCCAGGATACCCATAACGTGCGTTCGATATCTCTTCATCCTTCAGGAGATTATCTGTTAGCGGGTAAGTCTGCAAGAACGGATCATCCCATTGCCCACCTGTATGATGTCAATACTTTTCAGTGCTTTCTATCTGCAAATGTTCCGGAAATAGGAAATAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACAGGGAGTATGTATGTCACTGCTTCGAAAGACGGTGCAGTTCGTTTATGGGATGGCGTTAGTGCAAAATGTCTCCGCTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTTCGTTCTTTCTTGCGGAAAGGACTCCACTGTAAAACTTTGGGACGTGGGGACGGGGAGATTGGTGAAACAATATGTTGGAGCTACTCATATGCAATTGAGGTGTCAGGCTGTCTTCAATGATACTGAGGAGTTTGTGCTGTCAGTAGACGAACCGAGCAATGAGATTGTTATCTGGGATGCTCTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCGAACCACATCGGTGCACCCCGGTGGCTCGAGCACTCACCAACAGAGTCAGCCTTCATTTCCTGCGGGACCGATAAATCGATACGCTTTTGGAAGGAAACTCTCTAG 2568 44.98 MELKSSNCLIFLMQVTQQQNISAYDSLDPNGNIEIKWDVMYWTGDGYVATVTITNSQMYRHITSPGWTLGWEWAKNEIIWSMQGAEATDQGDCSTFRETIPHSCKRDPTVVDLLPGVPYNKQVARCCKGGVLTAWGQDPSSAVSAFQLTVGHSGSSNKTVRLPKNFTLYGPGLGYTCGPATIAPTSAFFSTGGRRKTNALMTWNVTCTYSQFLASETPTCCVSMSSFYNSKITPCKECACGCQDRTACILTESDLQSVTALNAPTNDSGSLLQCTAHNCPIQVHWHVKENYKGYWRVKITISNLNYELNYTQWTLVVEHPNFNNTMEVYSFVYKPLTPFISKNDTALFYGVKSFNDVLLQAGPNGNVHSEIIFQKDSTFTFKQGWAFPRKVYFDGDECKQNGEPSISESKIANAKKKQRNFARNSKEQAEMEGSFEQTLQDGKLYRQAASAAASATMTPLNVDIPPNKLLELVAKGLAVEKDEMLRGNPASALYEFGSSVPTTFGSTQASRASAIDFSAAQDTKGSSKSFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPEAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGKSARTDHPIAHLYDVNTFQCFLSANVPEIGNNGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKFTKDERFVLSCGKDSTVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSVDEPSNEIVIWDALTAERVARWPSNHIGAPRWLEHSPTESAFISCGTDKSIRFWKETL 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47482896 47491054 + Maker00036180 Lcy5g2474 634289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2474 855 Pfam WD domain, G-beta repeat 690 720 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 Pfam WD domain, G-beta repeat 535 569 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 Pfam WD domain, G-beta repeat 725 764 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 Pfam WD domain, G-beta repeat 591 626 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 Coils Coil 412 432 - -
Lcy5g2474 855 CDD WD40 534 852 - -
Lcy5g2474 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 538 579 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 SUPERFAMILY WD40 repeat-like 530 852 IPR036322 GO:0005515(InterPro)
Lcy5g2474 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 594 635 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 594 628 - -
Lcy5g2474 855 FunFam Cleavage stimulation factor subunit 50 521 855 - -
Lcy5g2474 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 740 773 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 688 720 - -
Lcy5g2474 855 PANTHER PROTEIN COBRA 10 400 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Lcy5g2474 855 ProSitePatterns Trp-Asp (WD) repeats signature. 751 765 IPR019775 -
Lcy5g2474 855 Gene3D - 518 854 IPR015943 GO:0005515(InterPro)
Lcy5g2474 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 688 729 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 Pfam COBRA-like protein 47 210 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lcy5g2474 855 SMART WD40_4 632 674 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 SMART WD40_4 587 626 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 SMART WD40_4 531 570 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 SMART WD40_4 723 764 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 SMART WD40_4 677 720 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 SMART WD40_4 767 809 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 SMART WD40_4 812 852 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2474 K14406 - - csv:101206503 790.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0306 Lcy-Chr3:9754620 Lcy5g2474 Lcy-Chr5:47482896 1.57E-190 dispersed
Lcy3g0307 Lcy-Chr3:9754620 Lcy5g2474 Lcy-Chr5:47482896 1.17E-180 dispersed
Lcy5g2474 Lcy-Chr5:47482896 Lcy6g0583 Lcy-Chr6:5520833 8.69E-132 dispersed
Lcy10g2071 Lcy-Chr10:44773898 Lcy5g2474 Lcy-Chr5:47482896 6.38E-72 wgd
Lcy2g0498 Lcy-Chr2:4281585 Lcy5g2474 Lcy-Chr5:47482896 1.78E-195 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0499 . 48 454 COBRA Gene Family AT5G60920 79.9 1.2e-211 733.0
Lcy3g0307 . 42 439 COBRA Gene Family AT5G60920 76.4 4.6e-200 694.5
Lcy3g0271 . 31 427 COBRA Gene Family AT5G60920 69.1 1.6e-179 626.3
Lcy2g0498 . 80 479 COBRA Gene Family AT5G60920 67.3 7.2e-177 617.5
Lcy3g0306 . 31 455 COBRA Gene Family AT5G60920 64.1 5.2e-175 611.3
Lcy3g0270 . 42 383 COBRA Gene Family AT5G60920 65.2 7.2e-161 564.3
Lcy5g2474 . 35 398 COBRA Gene Family AT5G60920 62.5 1.9e-145 513.1
Lcy6g0583 . 54 448 COBRA Gene Family AT5G60920 55.3 7.1e-132 468.0
Lcy10g2072 . 3 238 COBRA Gene Family AT5G60920 65.7 2.3e-98 356.7
Lcy10g2071 . 1 160 COBRA Gene Family AT5G60920 74.4 3.6e-75 279.6
Lcy2g0499 . 18 451 COBRA Gene Family AT3G02210 73.7 1.1e-207 719.9
Lcy3g0307 . 12 441 COBRA Gene Family AT3G02210 75.9 2.4e-205 712.2
Lcy2g0498 . 52 478 COBRA Gene Family AT3G02210 66.4 1.3e-179 626.7
Lcy3g0271 . 5 430 COBRA Gene Family AT3G02210 65.0 1.4e-176 616.7
Lcy3g0306 . 5 457 COBRA Gene Family AT3G02210 60.7 2.2e-171 599.4
Lcy3g0270 . 12 394 COBRA Gene Family AT3G02210 63.1 2.4e-165 579.3
Lcy5g2474 . 9 398 COBRA Gene Family AT3G02210 60.0 5.9e-148 521.5
Lcy6g0583 . 24 455 COBRA Gene Family AT3G02210 54.5 4.1e-141 498.8
Lcy10g2072 . 3 239 COBRA Gene Family AT3G02210 61.9 1.6e-92 337.4
Lcy10g2071 . 1 160 COBRA Gene Family AT3G02210 71.9 3.4e-71 266.5
Lcy2g0499 . 18 446 COBRA Gene Family AT3G29810 74.9 3.1e-202 701.8
Lcy3g0307 . 10 439 COBRA Gene Family AT3G29810 72.5 7.5e-196 680.6
Lcy3g0271 . 14 430 COBRA Gene Family AT3G29810 65.9 1.5e-175 613.2
Lcy2g0498 . 63 461 COBRA Gene Family AT3G29810 67.2 1.2e-174 610.1
Lcy3g0306 . 14 457 COBRA Gene Family AT3G29810 61.7 4.1e-170 595.1
Lcy3g0270 . 10 389 COBRA Gene Family AT3G29810 61.2 8.9e-157 550.8
Lcy5g2474 . 22 409 COBRA Gene Family AT3G29810 57.8 4.2e-146 515.4
Lcy6g0583 . 36 455 COBRA Gene Family AT3G29810 54.1 1.7e-139 493.4
Lcy10g2072 . 3 231 COBRA Gene Family AT3G29810 65.2 5.5e-90 328.9
Lcy10g2071 . 1 160 COBRA Gene Family AT3G29810 73.1 2.8e-73 273.5
Lcy2g0498 . 57 388 COBRA Gene Family AT5G15630 83.7 3.2e-178 621.7
Lcy3g0271 . 9 339 COBRA Gene Family AT5G15630 81.9 1.5e-175 612.8
Lcy3g0306 . 9 368 COBRA Gene Family AT5G15630 74.4 7.9e-169 590.5
Lcy2g0499 . 31 361 COBRA Gene Family AT5G15630 73.2 8.2e-150 527.3
Lcy3g0307 . 27 355 COBRA Gene Family AT5G15630 68.1 1.8e-144 509.6
Lcy5g2474 . 22 339 COBRA Gene Family AT5G15630 64.8 4.4e-135 478.4
Lcy3g0270 . 27 308 COBRA Gene Family AT5G15630 68.4 2.1e-121 433.0
Lcy10g2071 . 1 160 COBRA Gene Family AT5G15630 68.1 1.9e-66 250.4
Lcy10g2072 . 3 148 COBRA Gene Family AT5G15630 59.9 3.9e-51 199.5
Lcy3g0307 . 8 218 COBRA Gene Family AT5G60950 58.7 2.8e-65 245.7
Lcy3g0270 . 8 218 COBRA Gene Family AT5G60950 58.7 4.9e-65 245.0
Lcy2g0499 . 18 224 COBRA Gene Family AT5G60950 57.7 1.8e-64 243.0
Lcy3g0271 . 8 207 COBRA Gene Family AT5G60950 54.7 1.5e-58 223.4
Lcy2g0498 . 76 256 COBRA Gene Family AT5G60950 56.9 1.4e-56 216.9
Lcy5g2474 . 31 211 COBRA Gene Family AT5G60950 51.9 1.1e-48 190.7
Lcy10g2071 . 3 160 COBRA Gene Family AT5G60950 57.6 1.2e-47 187.2
Lcy6g0583 . 27 436 COBRA Gene Family AT1G09790 60.5 1.3e-152 537.0
Lcy3g0307 . 14 425 COBRA Gene Family AT1G09790 53.2 5.7e-135 478.4
Lcy2g0499 . 32 432 COBRA Gene Family AT1G09790 53.8 2.4e-133 473.0
Lcy2g0498 . 66 459 COBRA Gene Family AT1G09790 53.4 7.6e-132 468.0
Lcy3g0271 . 3 410 COBRA Gene Family AT1G09790 51.3 8.7e-128 454.5
Lcy10g2072 . 4 240 COBRA Gene Family AT1G09790 51.9 6.2e-73 272.3
Lcy11g1368 . 31 670 COBRA Gene Family AT4G16120 63.8 6.5e-252 867.5
Lcy6g1379 . 63 655 COBRA Gene Family AT4G16120 54.8 1.2e-205 713.8
Lcy9g1219 . 1 461 COBRA Gene Family AT4G16120 54.5 2.2e-159 560.1
Lcy11g1368 . 6 676 COBRA Gene Family AT3G16860 59.3 1.2e-237 820.1
Lcy6g1379 . 56 655 COBRA Gene Family AT3G16860 52.2 3.6e-194 675.6
Lcy9g1219 . 1 461 COBRA Gene Family AT3G16860 52.3 2.5e-147 520.0
Lcy11g1368 . 9 671 COBRA Gene Family AT5G49270 58.6 5.0e-236 814.7
Lcy6g1379 . 53 655 COBRA Gene Family AT5G49270 51.5 9.5e-195 677.6
Lcy9g1219 . 21 451 COBRA Gene Family AT5G49270 54.1 1.6e-149 527.3
Lcy6g1379 . 13 668 COBRA Gene Family AT3G20580 61.2 1.5e-251 866.3
Lcy11g1368 . 27 672 COBRA Gene Family AT3G20580 52.0 6.4e-207 718.0
Lcy9g1219 . 1 471 COBRA Gene Family AT3G20580 64.5 4.8e-194 675.2
Lcy6g1379 . 24 677 COBRA Gene Family AT4G27110 61.3 5.5e-243 837.8
Lcy11g1368 . 24 672 COBRA Gene Family AT4G27110 50.4 8.4e-199 691.0
Lcy9g1219 . 1 474 COBRA Gene Family AT4G27110 62.5 1.8e-185 646.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009578 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 32