Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2474 ATGGAGTTGAAGAGTTCAAACTGCCTGATATTTCTTATGCAAGTCACCCAGCAGCAGAACATATCGGCATACGACTCGTTGGACCCGAATGGAAACATTGAGATCAAATGGGATGTCATGTACTGGACTGGAGATGGTTATGTGGCAACTGTGACAATAACCAACTCTCAGATGTATCGACATATCACGAGCCCTGGATGGACCTTGGGATGGGAATGGGCAAAGAATGAGATCATTTGGTCCATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTAGAGAAACCATCCCACACAGTTGCAAAAGAGATCCAACAGTGGTTGACTTGCTTCCAGGTGTTCCTTACAACAAACAGGTTGCTAGGTGCTGCAAAGGTGGTGTTTTGACAGCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTCCAATTGACTGTTGGTCACTCTGGTAGTTCAAATAAAACAGTGAGACTTCCCAAGAATTTCACCTTGTATGGTCCAGGGTTAGGTTACACATGCGGCCCGGCAACGATTGCTCCGACGTCAGCTTTCTTCTCAACTGGTGGTCGTCGAAAAACTAATGCATTGATGACTTGGAATGTGACATGCACTTACTCGCAGTTTCTTGCTTCTGAAACGCCAACCTGCTGTGTCTCCATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTAAAGAATGTGCTTGTGGCTGCCAAGACAGAACAGCATGTATCCTGACCGAATCGGACCTTCAAAGCGTTACCGCATTGAATGCACCTACAAATGACAGTGGATCATTGCTGCAGTGCACGGCACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATACTGGCGGGTGAAGATAACTATCAGCAATTTAAACTATGAACTAAACTACACACAATGGACACTTGTTGTCGAGCACCCCAATTTCAACAACACAATGGAAGTTTATAGCTTTGTCTATAAGCCACTCACCCCCTTCATCTCCAAGAATGACACAGCTCTGTTCTATGGCGTAAAATCTTTCAATGACGTGCTACTTCAAGCAGGGCCAAATGGAAACGTTCACTCTGAGATAATTTTTCAGAAGGATTCAACATTTACATTCAAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTAAGCAGAATGGAGAACCATCAATCAGTGAATCGAAGATCGCAAATGCCAAAAAGAAGCAGAGAAATTTTGCCAGAAATTCGAAAGAGCAAGCAGAGATGGAAGGCAGCTTCGAGCAGACCCTTCAAGATGGGAAGCTTTATAGACAAGCTGCAAGTGCTGCTGCTTCAGCTACAATGACGCCACTGAATGTTGATATCCCGCCGAATAAGCTTCTGGAGCTCGTTGCAAAGGGTCTTGCAGTGGAGAAAGATGAGATGTTAAGAGGGAATCCTGCTTCTGCATTGTATGAATTTGGTTCATCAGTGCCCACTACATTTGGGTCTACACAGGCCTCTCGTGCTTCTGCCATCGACTTCAGTGCTGCGCAGGATACAAAAGGTTCGTCGAAGAGTTTTCCAAAGCACGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGGTTCAGTGCTGATGGGAGATTTGTTGCCACTGGAAGCGCGGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGAAGCAAAAGATGGTCCTGTCCGACCTGTTATAAGGACATTTTACGATCACATTCAACCAATAAATGATTTGGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACAATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTCAGAGTTATCCAGGATACCCATAACGTGCGTTCGATATCTCTTCATCCTTCAGGAGATTATCTGTTAGCGGGTAAGTCTGCAAGAACGGATCATCCCATTGCCCACCTGTATGATGTCAATACTTTTCAGTGCTTTCTATCTGCAAATGTTCCGGAAATAGGAAATAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACAGGGAGTATGTATGTCACTGCTTCGAAAGACGGTGCAGTTCGTTTATGGGATGGCGTTAGTGCAAAATGTCTCCGCTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTTCGTTCTTTCTTGCGGAAAGGACTCCACTGTAAAACTTTGGGACGTGGGGACGGGGAGATTGGTGAAACAATATGTTGGAGCTACTCATATGCAATTGAGGTGTCAGGCTGTCTTCAATGATACTGAGGAGTTTGTGCTGTCAGTAGACGAACCGAGCAATGAGATTGTTATCTGGGATGCTCTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCGAACCACATCGGTGCACCCCGGTGGCTCGAGCACTCACCAACAGAGTCAGCCTTCATTTCCTGCGGGACCGATAAATCGATACGCTTTTGGAAGGAAACTCTCTAG 2568 44.98 MELKSSNCLIFLMQVTQQQNISAYDSLDPNGNIEIKWDVMYWTGDGYVATVTITNSQMYRHITSPGWTLGWEWAKNEIIWSMQGAEATDQGDCSTFRETIPHSCKRDPTVVDLLPGVPYNKQVARCCKGGVLTAWGQDPSSAVSAFQLTVGHSGSSNKTVRLPKNFTLYGPGLGYTCGPATIAPTSAFFSTGGRRKTNALMTWNVTCTYSQFLASETPTCCVSMSSFYNSKITPCKECACGCQDRTACILTESDLQSVTALNAPTNDSGSLLQCTAHNCPIQVHWHVKENYKGYWRVKITISNLNYELNYTQWTLVVEHPNFNNTMEVYSFVYKPLTPFISKNDTALFYGVKSFNDVLLQAGPNGNVHSEIIFQKDSTFTFKQGWAFPRKVYFDGDECKQNGEPSISESKIANAKKKQRNFARNSKEQAEMEGSFEQTLQDGKLYRQAASAAASATMTPLNVDIPPNKLLELVAKGLAVEKDEMLRGNPASALYEFGSSVPTTFGSTQASRASAIDFSAAQDTKGSSKSFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPEAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGKSARTDHPIAHLYDVNTFQCFLSANVPEIGNNGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKFTKDERFVLSCGKDSTVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSVDEPSNEIVIWDALTAERVARWPSNHIGAPRWLEHSPTESAFISCGTDKSIRFWKETL 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47482896 47491054 + Maker00036180 Lcy5g2474 634289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2474 855 Pfam WD domain, G-beta repeat 690 720 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 Pfam WD domain, G-beta repeat 535 569 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 Pfam WD domain, G-beta repeat 725 764 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 Pfam WD domain, G-beta repeat 591 626 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 Coils Coil 412 432 - -
Lcy5g2474 855 CDD WD40 534 852 - -
Lcy5g2474 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 538 579 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 SUPERFAMILY WD40 repeat-like 530 852 IPR036322 GO:0005515(InterPro)
Lcy5g2474 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 594 635 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 594 628 - -
Lcy5g2474 855 FunFam Cleavage stimulation factor subunit 50 521 855 - -
Lcy5g2474 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 740 773 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 688 720 - -
Lcy5g2474 855 PANTHER PROTEIN COBRA 10 400 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Lcy5g2474 855 ProSitePatterns Trp-Asp (WD) repeats signature. 751 765 IPR019775 -
Lcy5g2474 855 Gene3D - 518 854 IPR015943 GO:0005515(InterPro)
Lcy5g2474 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 688 729 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 Pfam COBRA-like protein 47 210 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lcy5g2474 855 SMART WD40_4 632 674 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 SMART WD40_4 587 626 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 SMART WD40_4 531 570 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 SMART WD40_4 723 764 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 SMART WD40_4 677 720 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 SMART WD40_4 767 809 IPR001680 GO:0005515(InterPro)
Lcy5g2474 855 SMART WD40_4 812 852 IPR001680 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0306 Lcy-Chr3:9754620 Lcy5g2474 Lcy-Chr5:47482896 1.57E-190 dispersed
Lcy3g0307 Lcy-Chr3:9754620 Lcy5g2474 Lcy-Chr5:47482896 1.17E-180 dispersed
Lcy5g2474 Lcy-Chr5:47482896 Lcy6g0583 Lcy-Chr6:5520833 8.69E-132 dispersed
Lcy10g2071 Lcy-Chr10:44773898 Lcy5g2474 Lcy-Chr5:47482896 6.38E-72 wgd
Lcy2g0498 Lcy-Chr2:4281585 Lcy5g2474 Lcy-Chr5:47482896 1.78E-195 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2474 K14406 - csv:101206503 790.415