Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy5g2475 | ATGTCTTTCGAACACGAGTTTCTGTTCCTTCCCTCGTTCGGGATCGCCTCAACAATGGCGAATCTCAACTTCCTTTTCTGGTTCCTTCTCTTTATCGTCGTTTTTGGCCTTTGCCTCAGCTCGGGCGGTCTAGCCTGGGCTTTGATTTCTAGGCCAAGAAACAAACCCATCATTCCTGGCCCTTGTGGCATCCCTTTTTTAGGTCAAGTTTCAACCTTTACTTCTTCTCTCACTCATAGAGTTCTCGCCAAGCTCGCTCAGAGCTTAAAGGCGAAACCTTTGATGTCATTCTCAATTGGGTTCACTCGTTTTGTCATTTCCAGCAACCCCATCACTGCCAAAGAGCTTCTGAACAGCTCGGCGTTCGCCGATCGTCCGATCAAGGAATCGGCTTACGAGCTTTTGTTCCATAGAGCAATGGGGTTTGCTCCTTATGGAGAGTATTGGAGGAATCTCAGGAAGATTTCTTCCACTCGTTTGTTCAGTCCTAAGAGAATTTCGAGTTTTGGGGAGTTGAGAGAGAGGATTGGGGTTCAAATGGTGGAGGAAATCAAGGGTTTGATGGAGAAAAATGGGGAAGTTGAAGTGAGGAAAGTTTTGCATTTTGGGTCGTTGAATAATGTGATGGGAAGTGTTTTTGGGAAAAGTAGTTATGAGTTTGGTGGTGAAAGTGAGCTTGAGGGATTGGTGAGTGAAGGGTATGATTTGCTTGGGAGTTTCAATTGGAGTGATCACTTTCCTCTTTTGGGTTGGTTGGATTTGCAAGGTGTGAGAAAAAGGTGCAAAATTTTGGTGGGAAAAGTGAATGTTTTTGTTGGGAAAATCATAGAGGAACATAGAATGAATAGGAGAATAATCAAAGAAAACAACAATCAAGGAAAGCCTCTTCATGACAATGAAGATGGAGATTTTGTTGATGTGTTGCTTGATTTGGAAAAGGAAAACAAACTCACTGACTCTGATATGATTGCTGTGCTGTGGGAGATGATCTTTAGAGGAACAGACACGGTGGCAATTCTCCTAGAATGGATTCTAGCAAGAATGGTTCTTCATCCCGACATCCAAAGGAAACTCCAAGCCGAAATTGACCGAGTCGTCAAACCCAGCCGAGACGTTTCGGATTCGGACCTCCCAAATCTCCCTTATCTCCATGCAGTCGTCAAAGAGACTCTAAGAATGCACCCGCCGGGCCCACTCCTCTCGTGGGCCCGCCTCGCCATCCACGACACCCACGTCGGCGGCCACTTCGTTCCCGCCGGCACCACCGCCATGGTCAACATGTGGGCCATAACACACGACGACCAAATCTGGCCCAACCCGACCGCATTCGACCCGGACCGATTCATCCAAAATGATGTGGCAATCATGGGGTCCGATCTGCGGCTAGCGCCATTCGGGTCCGGAAGAAGGGTCTGCCCTGGCAAGGCCATGGGGCTAGCCACGGTCGAGCTTTGGCTCGCCCAGTTGGTTCAGAGGTTCGAGTGGGTTCAGGTGGGTGGTGGCTCTGGAAATGGAGTGGACTTGTCTGAGTGTTTGAAGCTGTCACTGGAAATGAAACAACCCTTGATCTGTAGGGCTGTCCCCAGAGTTGTAGGGTTGATTTGA | 1605 | 48.35 | MSFEHEFLFLPSFGIASTMANLNFLFWFLLFIVVFGLCLSSGGLAWALISRPRNKPIIPGPCGIPFLGQVSTFTSSLTHRVLAKLAQSLKAKPLMSFSIGFTRFVISSNPITAKELLNSSAFADRPIKESAYELLFHRAMGFAPYGEYWRNLRKISSTRLFSPKRISSFGELRERIGVQMVEEIKGLMEKNGEVEVRKVLHFGSLNNVMGSVFGKSSYEFGGESELEGLVSEGYDLLGSFNWSDHFPLLGWLDLQGVRKRCKILVGKVNVFVGKIIEEHRMNRRIIKENNNQGKPLHDNEDGDFVDVLLDLEKENKLTDSDMIAVLWEMIFRGTDTVAILLEWILARMVLHPDIQRKLQAEIDRVVKPSRDVSDSDLPNLPYLHAVVKETLRMHPPGPLLSWARLAIHDTHVGGHFVPAGTTAMVNMWAITHDDQIWPNPTAFDPDRFIQNDVAIMGSDLRLAPFGSGRRVCPGKAMGLATVELWLAQLVQRFEWVQVGGGSGNGVDLSECLKLSLEMKQPLICRAVPRVVGLI | 534 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 47499117 | 47501714 | - | Maker00036475 | Lcy5g2475 | 634290 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy5g2475 | 534 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 465 | 474 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy5g2475 | 534 | PRINTS | P450 superfamily signature | 463 | 472 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g2475 | 534 | PRINTS | P450 superfamily signature | 332 | 349 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g2475 | 534 | PRINTS | P450 superfamily signature | 385 | 396 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g2475 | 534 | SUPERFAMILY | Cytochrome P450 | 58 | 529 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g2475 | 534 | FunFam | Cytochrome P450 78A5 | 50 | 529 | - | - | |
| Lcy5g2475 | 534 | Gene3D | Cytochrome P450 | 47 | 526 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g2475 | 534 | CDD | CYP78 | 90 | 522 | - | - | |
| Lcy5g2475 | 534 | PRINTS | E-class P450 group I signature | 472 | 495 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g2475 | 534 | PRINTS | E-class P450 group I signature | 341 | 367 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g2475 | 534 | PRINTS | E-class P450 group I signature | 462 | 472 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g2475 | 534 | PRINTS | E-class P450 group I signature | 384 | 402 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g2475 | 534 | PRINTS | E-class P450 group I signature | 426 | 450 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g2475 | 534 | PRINTS | E-class P450 group I signature | 321 | 338 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g2475 | 534 | Pfam | Cytochrome P450 | 59 | 496 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g2475 | 534 | PANTHER | CYTOCHROME P450 78A7-RELATED | 12 | 526 | IPR051996 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g1642 | Lcy-Chr13:35382841 | Lcy5g2475 | Lcy-Chr5:47499117 | 2.83E-240 | dispersed | |
| Lcy4g1060 | Lcy-Chr4:19586633 | Lcy5g2475 | Lcy-Chr5:47499117 | 8.58E-168 | dispersed | |
| Lcy5g2475 | Lcy-Chr5:47499117 | Lcy7g0047 | Lcy-Chr7:363829 | 2.15E-183 | dispersed | |
| Lcy3g1455 | Lcy-Chr3:41312466 | Lcy5g2475 | Lcy-Chr5:47499117 | 4.66E-46 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy5g2475 | K20619 | - | csv:101203458 | 848.58 |