Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy5g2517 | ATGGGGTGTGTGAACACGAAGCAGGCGGTGTCCGTTACGCCTGCATTCGATCACTCCGGTGTGTTTCGGGACAATGAATCGACGGCGATGGGCAACTCCGGTCGGAGCCGACTCGGGTTGGGGGAGATTGAGAAGGGTTCGAAGCCGAAGGCCAAGACGAAGACGAAGACGAAGGGGTCCAGTGAGTTCAATGGGGTTGCGAGCGAGTTGGGTGAGTCGGGTCGGGCGAGTTCTAATGGCGGAGGGAATGAGACTTTGAGCTTCAGATTGGGGAATTTGAACAAGTATATGGAAAGTGAGCAAGTGGCGGCGGGGTGGCCGGCTTGGCTCAGCGCCGTCGCCGGTGAAGCCATTCAGGGTTGGGTTCCGCTCCGGTCCGATGCCTATGAGAAGTTGGAAAAGATTGGACAAGGTACATATAGCAGTGTATTCCGAGCACGTGAACTTGAAACAGGGAGGATAGTCGCTTTGAAGAAGGTTCGGTTCGACAATTTTGAGCCTGAAAGTGTTCGGTTTATGGCACGAGAGATAATGATTCTTCGAAGGCTTGATCACCCCAACATCATCAAATTGGAGGGCTTAATTACGTCTCGTTTATCATGTAGCATTTATCTTGTGTTCGAGTACATGGACCACGACATCACTGGACTCTTGTCCTGCCCCGACATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGTTATCCGGGCTTGAGCATTGTCACTCACGTGGCGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGGGTATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCAGTAATTCCGGGCACCGGCAACCTCTAACGAGTCGTGTTGTCACTCTATGGTATCGTCCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTCGCAGAACTCCTTGTTGGGAAACCTATTCTTCAAGGAAGAACAGAGGTTGAACAGTTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGAATACTGGAAAAAATCTAAACTTCCTCATGCCACTTTGTTCAAGCCACAACATCCTTATAATAATTGTTTACGGCAGACCTTCAAAGATCATCCATCGACGACTGTGAACTTGTTAGAAACTCTTCTTTCTATCGAACCATACAAGCGTGGAGTTGCCTCCTCCGCTCTCACATCTGAGTATTTCAGTACAAAACCGTATGCGTGCGATCCATCAAGCATGCCAATATATCCACCTAGCAAAGAGATTGATGCAAAACAAAGGGAGGAGTCTAGAAGGAAAAAAGGTAGTGGAAGAACCCGTGGACTAGATAACCGAAGGTTAACGCGAAAGCATCTCGGAATCAGTAAATTGGCACCAGCAGAGGACTTATCAGTCTCCGCTCGAGATTTGCATAAAATTAGTATTAATGCACAAAATCTTAAAGAAGAGAAGGCTATCAAAGGTGGTGAGGCGCAAAAGCTGTCAATTGATAAATTGGAGGATTCTATACATGTGAAGAATGCATCTCAAGGAGACATTCCCTTCTCTGGCCCCCTACAAGTTTCTACATCAAGTGGCTTTGCGTGGGCAAGACGACGAAGAGACGATGCCTCTATTAGATCGCATTCGAGATCAATTTCACGAGGACACCTAATTAATGGACTGGACCACTCTGCTATATTGCATTCAAGAAGCAATGTGGACTCTAAGTTTCATGAAAAGGGAGACATGTCCATCAGCCGCTCGAGTTCCAAGGGTCATGAATCAAATGAGAGATCCAAGGTTGTGATACGGAATCAGTGGGGCAAGTTTGAGCGTCCCGATTCGTTTGATACTTCGGATGAGTACCACTCGCAGGAATTTGCAGTTGCACTTTATTTGCGAGATGAAATGGAAGCTAAGAGGAGTAATATGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAGACAGACATGAGAGGCACATCCGACAGACAGTTCGAAGATCGTGGTTCCAAAGAGGACCATCTGTTCTCACCTATGCATCTTGGGCTTAG | 2118 | 46.41 | MGCVNTKQAVSVTPAFDHSGVFRDNESTAMGNSGRSRLGLGEIEKGSKPKAKTKTKTKGSSEFNGVASELGESGRASSNGGGNETLSFRLGNLNKYMESEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFSNSGHRQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDHPSTTVNLLETLLSIEPYKRGVASSALTSEYFSTKPYACDPSSMPIYPPSKEIDAKQREESRRKKGSGRTRGLDNRRLTRKHLGISKLAPAEDLSVSARDLHKISINAQNLKEEKAIKGGEAQKLSIDKLEDSIHVKNASQGDIPFSGPLQVSTSSGFAWARRRRDDASIRSHSRSISRGHLINGLDHSAILHSRSNVDSKFHEKGDMSISRSSSKGHESNERSKVVIRNQWGKFERPDSFDTSDEYHSQEFAVALYLRDEMEAKRSNMSYQDQVDKVEYSGPLLSQSSRVDELLDRHERHIRQTVRRSWFQRGPSVLTYASWA | 705 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 47946824 | 47952762 | + | Maker00036327 | Lcy5g2517 | 634332 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy5g2517 | 705 | PANTHER | CELL DIVISION PROTEIN KINASE | 129 | 413 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
| Lcy5g2517 | 705 | MobiDBLite | consensus disorder prediction | 433 | 459 | - | - | |
| Lcy5g2517 | 705 | FunFam | probable serine/threonine-protein kinase At1g54610 | 212 | 452 | - | - | |
| Lcy5g2517 | 705 | MobiDBLite | consensus disorder prediction | 583 | 605 | - | - | |
| Lcy5g2517 | 705 | SUPERFAMILY | Protein kinase-like (PK-like) | 123 | 419 | IPR011009 | - | |
| Lcy5g2517 | 705 | Gene3D | Transferase(Phosphotransferase) domain 1 | 212 | 452 | - | - | |
| Lcy5g2517 | 705 | MobiDBLite | consensus disorder prediction | 58 | 83 | - | - | |
| Lcy5g2517 | 705 | MobiDBLite | consensus disorder prediction | 23 | 83 | - | - | |
| Lcy5g2517 | 705 | ProSiteProfiles | Protein kinase domain profile. | 129 | 413 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy5g2517 | 705 | SMART | serkin_6 | 129 | 413 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy5g2517 | 705 | Pfam | Protein kinase domain | 129 | 413 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy5g2517 | 705 | FunFam | probable serine/threonine-protein kinase At1g54610 | 116 | 211 | - | - | |
| Lcy5g2517 | 705 | Gene3D | Phosphorylase Kinase; domain 1 | 116 | 211 | - | - | |
| Lcy5g2517 | 705 | ProSitePatterns | Protein kinases ATP-binding region signature. | 135 | 158 | IPR017441 | GO:0005524(InterPro) | |
| Lcy5g2517 | 705 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 249 | 261 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy5g2517 | 705 | CDD | STKc_CDK9_like | 129 | 413 | - | - | |
| Lcy5g2517 | 705 | MobiDBLite | consensus disorder prediction | 423 | 459 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy5g2517 | Lcy-Chr5:47946824 | Lcy6g0602 | Lcy-Chr6:5733147 | 9.36E-191 | dispersed | |
| Lcy10g2039 | Lcy-Chr10:44495150 | Lcy5g2517 | Lcy-Chr5:47946824 | 5.23E-221 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 65992 | None | None | None | None | Lcy | PK |
Pathway information