Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2518 ATGGCGCTGTTTAGAAAATTGTTCTACCGGAAGCCTCCAGATCGGCTTCTTGAGATCGCGGAGAGAGTTTACGTGTTTGATTGTTGCTTCTCTACCGACGTCTTGGAAGAGGATGAATACAAAGTGTACTTGGCTAGCATTATACCAAAGCTGCAAGATCACTTTCCTGATGCTTCTTTCATGGTGTTTAACTTTAGTGAAAGAAAGAGGAAGACTAAAACTTCAGACATATTGTCTCAATACGGTATGACAGTGATGGAATATCCTCTGCAATATGAAGGGTGTCCACTACTGCCACTGGAAATGATCCACCACTTCATTCGGTCGAGTGAAAGCTGGTTGTCCTTGGAGAGACAGAAGAATGTATTGTTGATGAACTGTGAACGAGGAGGATGGCCTATCCTCGCTTTCATGCTTTCAGGTCTCTTATTGTACCGTAAACAATATGAAGGGGAGCAGAAGACCCTTGAAATGGTCTACAGGCAAGCTCCTAGAGAACTTTTCCATGTCCTTTCCCCTGTAAACTCACAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAATGTAGGTTCTGATTGGCCTCCACCTGATACACCTCTAATTTTAGACTGTCTGATACTTCGAGACCTTCCTATGCTTGATGGAGGAAATGGGTGCAGGCCTATCATACGTATTTACGGTCAGGACCCATCAACACCACGAAATAGAAGTCCAAAACTTGTTTTTTCTAGTGTAAAGATGAAAAGACATGGTTCCCAGTATCTACAGGCAGCAAGCAGACTGGTAAAAATGGACGTCCATTGTTATGTTCAAGGGGATGTTGTTCTTGAGTGCATCCATTTAGATCGAGATCTAATACACGAGGAAGTGATGTTTAGAGTTATGTTTCACACGGCGTTTGTGCATTCAAACAGTTTGAAGCTCAATCGTGATGAGGTTGATGTTATATGGGATGCCAAGGAGCAGTTTCCTAAAGATTTTAGAGCAGAGGTACTTTTTCTGGATGCTGATGATGTTGTGCCAAACCTCTCTACAGTGACGAAAAGTGACGACAAAATTGAAATTGAAAGCAATTCGACTGAGGAGTTTTTTGAAGTGGAAGAAATATTTAGCAATATTGTTGACGTGCAGGAAGTTAAGAGGGACTACGATGTTCAAATGGTACATGCTAATGAAACAGATGATATTGACCTTCAAGCAGTTTGGAAGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCTTTTGGAGGGAGTCAAAACTTGGACAAGAAAATGGATTGTAACGTTGAAGCAGTGAAAGACATAACTATTGATGACGTGACTTTCATGACAGATGAAAAAGCGGACTCTGGTCTTCATGTAGTGAAGGATATTGTTGTGGATTATGGAGATAAAAAGCCAAATCCTCTGCTATTTTCTGTTAATGTACTGAGACGTATGGGAATCAAGGAACTGATAGACAATGCTTACGACAAGTTGGAAGGGGTGGAGCGTAAAGGGTACGGAGAAGAGACTGCTGCTATTCCAGACTTTGAAACAAAGGTTCCTGCGAAAAAGTTGGATTCTGATGCGTGGAGGCTGAAATATGAGAAGTCGCAGTCACTAGCATCTAGGAAACAGCCTTCATCAACAGCTAAGCTAATAAATCATACAACTATAGTTAAACAGAAGACCAAACAGCCAGAAGATCAGGACGTTCTTGTAAGACATGCAAAACCAAATACTCTTTCTAGATGGACTCCAAATGAAAAAGAGTCTTACATAAACTCCATGCATGTGTTTTATCCACCATCAAGGTATACCGGTGCCTCGGCAACATCTATCAGCTCTCCTACTAGAGATTCTTATTCATATTCAACTTCAAAATCTGCTTCTGCTACTTTAGGACTGCTGCTGTCAACTGATACAGCTGATGAACAAAAAAGTAACAAGGTGAGTCCTAAAAAACCTTTATGTTCCGCGACAGAGATTCTCACGAGTAAACCACAGTCACCGCTTGGCTCCCCAAGACTAATGCCAAATTCAGTTCTGCATCAAGATCCTACTCTTCCTCTATCTCCAACTACACTTCTACAGCCACCAGCTCTTCATGCTAACACATCTTTCTTGCATGCATCCTCTCCTAAATCTTCTTTCTCACCCTCTTCATATTCTCACATAAATGCAAGATCTCCTCCTCCACCTCCACCTCCACCACCACCTCCACCTTCCAGTCACGTGGCGCCTAAAAGTTCAGCATTGGTGTGTGGAAATACACCTAAGCATAGTGCTCCACCGGCACCACCTCCGCCTCCTGTACGTAGAGCTCAACCACAATTACCTCCCCCACAGCCACCCCATTCACATGGAGCTCTGCTTTCTCCACGCCTCTCAAATGCTGGAGCTTTGCCACCACCCCCTCCCCCACCTCCTCCAATTCAGAGGGCAGCTCCACATTTAACCCAGGGGCGACAGGCTTTAACATCTCCAACAACCTGTGTAGTCTCATCATCCCTGCCATCACCAATTTGTGAAGCACCATCACCTCCTCAACCTACGACTGGTCCCCTTCCACTGGTTCCTTTTCCTTCCAGACCTTCAGGAGCTATGTCTCCACACCCGGGAGCTAAAGGAGTAAGTTCTTCAACTGATGTGAAAGCATCATCTATAGTGAGGGGACGTGGGTTCTCGCGGTTAATGGGCACGGGGGTGGGTGCTACAGTGCCTCAACGATCATCATTAAAACCTCTGCATTGGAGCAAGGTGACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATCTGGAGATCCTGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACACTTTTCTCTGTGATTGTCCCTAAACCTATTGTTGATTCAGGAGGTAAATCCGGGGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCTGACATGATGGCAGCAGTACTCTCCATGGATGAGTCTGTATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATAGAGCTTCTCAAGGGATACTGTGGTGACAAGGATAAACTTGGAAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTAGAGTCAAAGTTAAGAGTGTTCTCTTTCAAGATTCACTTCAGCTCTCAGATAGTAGAGTTCAGAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTAAAGAATTCTTGCAAATTGAAGGAGATATTGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACTGCTAGGGGTTCTGCAATTGGATTCAGGTTGGATAGTCTCTCAAAACTCACAGATACACGTGCTTCTAACAATAAGATGACTCTCATGCATTATCTCTGTAAGGTCCTTGCTTCGAAGTCACCATCACTTCTTGATTTTCATCTGGACCTTGGTAGCTTGGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAAGCAATAACAAAAGGATTGGACAAGGTGAAGCAGGAACTAGTTGCATCTGAAAGCGATGGCCCCATCTCTGAAACTTTCCATAAGACGTTGAAAGGATTTGTTACTCTTGCCGAGACAGAGGTGGAATCTGTGACAGTTCTTTACTCGATGGCGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGTGAGGATCCTGCCCGTTGTCCATTTGAACAAGTTACAGGAACTCTCTTCCATTTCACAAGGTCCTTTCTGAAAGCACATGAAGAGAATTGCAAGCAGTTAGAAATGGAGATGAGAAGGCTGAGAAAATAG 3897 43.39 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTDVLEEDEYKVYLASIIPKLQDHFPDASFMVFNFSERKRKTKTSDILSQYGMTVMEYPLQYEGCPLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSGLLLYRKQYEGEQKTLEMVYRQAPRELFHVLSPVNSQPSQMRYLQYISRRNVGSDWPPPDTPLILDCLILRDLPMLDGGNGCRPIIRIYGQDPSTPRNRSPKLVFSSVKMKRHGSQYLQAASRLVKMDVHCYVQGDVVLECIHLDRDLIHEEVMFRVMFHTAFVHSNSLKLNRDEVDVIWDAKEQFPKDFRAEVLFLDADDVVPNLSTVTKSDDKIEIESNSTEEFFEVEEIFSNIVDVQEVKRDYDVQMVHANETDDIDLQAVWKEDADPPTFQRCKSFGGSQNLDKKMDCNVEAVKDITIDDVTFMTDEKADSGLHVVKDIVVDYGDKKPNPLLFSVNVLRRMGIKELIDNAYDKLEGVERKGYGEETAAIPDFETKVPAKKLDSDAWRLKYEKSQSLASRKQPSSTAKLINHTTIVKQKTKQPEDQDVLVRHAKPNTLSRWTPNEKESYINSMHVFYPPSRYTGASATSISSPTRDSYSYSTSKSASATLGLLLSTDTADEQKSNKVSPKKPLCSATEILTSKPQSPLGSPRLMPNSVLHQDPTLPLSPTTLLQPPALHANTSFLHASSPKSSFSPSSYSHINARSPPPPPPPPPPPPSSHVAPKSSALVCGNTPKHSAPPAPPPPPVRRAQPQLPPPQPPHSHGALLSPRLSNAGALPPPPPPPPPIQRAAPHLTQGRQALTSPTTCVVSSSLPSPICEAPSPPQPTTGPLPLVPFPSRPSGAMSPHPGAKGVSSSTDVKASSIVRGRGFSRLMGTGVGATVPQRSSLKPLHWSKVTRVLQGSLWEELQRSGDPESAPEFDVSELETLFSVIVPKPIVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEIELLKGYCGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIVEFRKSLNTVNSVCQEVKNSCKLKEILKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKMTLMHYLCKVLASKSPSLLDFHLDLGSLEAASKIQLKSLAEEMQAITKGLDKVKQELVASESDGPISETFHKTLKGFVTLAETEVESVTVLYSMAGRNADALALYFGEDPARCPFEQVTGTLFHFTRSFLKAHEENCKQLEMEMRRLRK 1298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47956296 47968326 + Maker00036723 Lcy5g2518 634333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2518 1298 Pfam Formin Homology 2 Domain 906 1278 IPR015425 -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 819 840 - -
Lcy5g2518 1298 SMART PTEN_C2_2 198 338 IPR014020 -
Lcy5g2518 1298 SUPERFAMILY Formin homology 2 domain (FH2 domain) 802 1297 - -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 710 883 - -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 760 787 - -
Lcy5g2518 1298 PANTHER FORMIN-J 1 1294 IPR051144 -
Lcy5g2518 1298 Coils Coil 1185 1205 - -
Lcy5g2518 1298 Gene3D - 205 336 - -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 798 814 - -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 642 697 - -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 726 745 - -
Lcy5g2518 1298 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Lcy5g2518 1298 ProSiteProfiles Formin homology-2 (FH2) domain profile. 902 1298 IPR015425 -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 661 675 - -
Lcy5g2518 1298 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Lcy5g2518 1298 SMART it6_source 902 1297 IPR015425 -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 841 866 - -
Lcy5g2518 1298 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Lcy5g2518 1298 Pfam C2 domain of PTEN tumour-suppressor protein 198 336 IPR014020 -
Lcy5g2518 1298 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Lcy5g2518 1298 Gene3D Formin, FH2 domain 903 1289 IPR042201 -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 710 725 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0173 Lcy-Chr2:1380744 Lcy5g2518 Lcy-Chr5:47956296 1.36E-286 dispersed
Lcy5g2518 Lcy-Chr5:47956296 Lcy9g1889 Lcy-Chr9:43958041 7.48E-290 dispersed
Lcy5g2518 Lcy-Chr5:47956296 Lcy5g2522 Lcy-Chr5:48002627 2.45E-23 proximal
Lcy12g0005 Lcy-Chr12:227898 Lcy5g2518 Lcy-Chr5:47956296 1.34E-47 transposed
Lcy2g0552 Lcy-Chr2:4730283 Lcy5g2518 Lcy-Chr5:47956296 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2518 K28090 - csv:101221127 2072.74