Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2518 ATGGCGCTGTTTAGAAAATTGTTCTACCGGAAGCCTCCAGATCGGCTTCTTGAGATCGCGGAGAGAGTTTACGTGTTTGATTGTTGCTTCTCTACCGACGTCTTGGAAGAGGATGAATACAAAGTGTACTTGGCTAGCATTATACCAAAGCTGCAAGATCACTTTCCTGATGCTTCTTTCATGGTGTTTAACTTTAGTGAAAGAAAGAGGAAGACTAAAACTTCAGACATATTGTCTCAATACGGTATGACAGTGATGGAATATCCTCTGCAATATGAAGGGTGTCCACTACTGCCACTGGAAATGATCCACCACTTCATTCGGTCGAGTGAAAGCTGGTTGTCCTTGGAGAGACAGAAGAATGTATTGTTGATGAACTGTGAACGAGGAGGATGGCCTATCCTCGCTTTCATGCTTTCAGGTCTCTTATTGTACCGTAAACAATATGAAGGGGAGCAGAAGACCCTTGAAATGGTCTACAGGCAAGCTCCTAGAGAACTTTTCCATGTCCTTTCCCCTGTAAACTCACAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAATGTAGGTTCTGATTGGCCTCCACCTGATACACCTCTAATTTTAGACTGTCTGATACTTCGAGACCTTCCTATGCTTGATGGAGGAAATGGGTGCAGGCCTATCATACGTATTTACGGTCAGGACCCATCAACACCACGAAATAGAAGTCCAAAACTTGTTTTTTCTAGTGTAAAGATGAAAAGACATGGTTCCCAGTATCTACAGGCAGCAAGCAGACTGGTAAAAATGGACGTCCATTGTTATGTTCAAGGGGATGTTGTTCTTGAGTGCATCCATTTAGATCGAGATCTAATACACGAGGAAGTGATGTTTAGAGTTATGTTTCACACGGCGTTTGTGCATTCAAACAGTTTGAAGCTCAATCGTGATGAGGTTGATGTTATATGGGATGCCAAGGAGCAGTTTCCTAAAGATTTTAGAGCAGAGGTACTTTTTCTGGATGCTGATGATGTTGTGCCAAACCTCTCTACAGTGACGAAAAGTGACGACAAAATTGAAATTGAAAGCAATTCGACTGAGGAGTTTTTTGAAGTGGAAGAAATATTTAGCAATATTGTTGACGTGCAGGAAGTTAAGAGGGACTACGATGTTCAAATGGTACATGCTAATGAAACAGATGATATTGACCTTCAAGCAGTTTGGAAGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCTTTTGGAGGGAGTCAAAACTTGGACAAGAAAATGGATTGTAACGTTGAAGCAGTGAAAGACATAACTATTGATGACGTGACTTTCATGACAGATGAAAAAGCGGACTCTGGTCTTCATGTAGTGAAGGATATTGTTGTGGATTATGGAGATAAAAAGCCAAATCCTCTGCTATTTTCTGTTAATGTACTGAGACGTATGGGAATCAAGGAACTGATAGACAATGCTTACGACAAGTTGGAAGGGGTGGAGCGTAAAGGGTACGGAGAAGAGACTGCTGCTATTCCAGACTTTGAAACAAAGGTTCCTGCGAAAAAGTTGGATTCTGATGCGTGGAGGCTGAAATATGAGAAGTCGCAGTCACTAGCATCTAGGAAACAGCCTTCATCAACAGCTAAGCTAATAAATCATACAACTATAGTTAAACAGAAGACCAAACAGCCAGAAGATCAGGACGTTCTTGTAAGACATGCAAAACCAAATACTCTTTCTAGATGGACTCCAAATGAAAAAGAGTCTTACATAAACTCCATGCATGTGTTTTATCCACCATCAAGGTATACCGGTGCCTCGGCAACATCTATCAGCTCTCCTACTAGAGATTCTTATTCATATTCAACTTCAAAATCTGCTTCTGCTACTTTAGGACTGCTGCTGTCAACTGATACAGCTGATGAACAAAAAAGTAACAAGGTGAGTCCTAAAAAACCTTTATGTTCCGCGACAGAGATTCTCACGAGTAAACCACAGTCACCGCTTGGCTCCCCAAGACTAATGCCAAATTCAGTTCTGCATCAAGATCCTACTCTTCCTCTATCTCCAACTACACTTCTACAGCCACCAGCTCTTCATGCTAACACATCTTTCTTGCATGCATCCTCTCCTAAATCTTCTTTCTCACCCTCTTCATATTCTCACATAAATGCAAGATCTCCTCCTCCACCTCCACCTCCACCACCACCTCCACCTTCCAGTCACGTGGCGCCTAAAAGTTCAGCATTGGTGTGTGGAAATACACCTAAGCATAGTGCTCCACCGGCACCACCTCCGCCTCCTGTACGTAGAGCTCAACCACAATTACCTCCCCCACAGCCACCCCATTCACATGGAGCTCTGCTTTCTCCACGCCTCTCAAATGCTGGAGCTTTGCCACCACCCCCTCCCCCACCTCCTCCAATTCAGAGGGCAGCTCCACATTTAACCCAGGGGCGACAGGCTTTAACATCTCCAACAACCTGTGTAGTCTCATCATCCCTGCCATCACCAATTTGTGAAGCACCATCACCTCCTCAACCTACGACTGGTCCCCTTCCACTGGTTCCTTTTCCTTCCAGACCTTCAGGAGCTATGTCTCCACACCCGGGAGCTAAAGGAGTAAGTTCTTCAACTGATGTGAAAGCATCATCTATAGTGAGGGGACGTGGGTTCTCGCGGTTAATGGGCACGGGGGTGGGTGCTACAGTGCCTCAACGATCATCATTAAAACCTCTGCATTGGAGCAAGGTGACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATCTGGAGATCCTGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACACTTTTCTCTGTGATTGTCCCTAAACCTATTGTTGATTCAGGAGGTAAATCCGGGGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCTGACATGATGGCAGCAGTACTCTCCATGGATGAGTCTGTATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATAGAGCTTCTCAAGGGATACTGTGGTGACAAGGATAAACTTGGAAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTAGAGTCAAAGTTAAGAGTGTTCTCTTTCAAGATTCACTTCAGCTCTCAGATAGTAGAGTTCAGAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTAAAGAATTCTTGCAAATTGAAGGAGATATTGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACTGCTAGGGGTTCTGCAATTGGATTCAGGTTGGATAGTCTCTCAAAACTCACAGATACACGTGCTTCTAACAATAAGATGACTCTCATGCATTATCTCTGTAAGGTCCTTGCTTCGAAGTCACCATCACTTCTTGATTTTCATCTGGACCTTGGTAGCTTGGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAAGCAATAACAAAAGGATTGGACAAGGTGAAGCAGGAACTAGTTGCATCTGAAAGCGATGGCCCCATCTCTGAAACTTTCCATAAGACGTTGAAAGGATTTGTTACTCTTGCCGAGACAGAGGTGGAATCTGTGACAGTTCTTTACTCGATGGCGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGTGAGGATCCTGCCCGTTGTCCATTTGAACAAGTTACAGGAACTCTCTTCCATTTCACAAGGTCCTTTCTGAAAGCACATGAAGAGAATTGCAAGCAGTTAGAAATGGAGATGAGAAGGCTGAGAAAATAG 3897 43.39 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTDVLEEDEYKVYLASIIPKLQDHFPDASFMVFNFSERKRKTKTSDILSQYGMTVMEYPLQYEGCPLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSGLLLYRKQYEGEQKTLEMVYRQAPRELFHVLSPVNSQPSQMRYLQYISRRNVGSDWPPPDTPLILDCLILRDLPMLDGGNGCRPIIRIYGQDPSTPRNRSPKLVFSSVKMKRHGSQYLQAASRLVKMDVHCYVQGDVVLECIHLDRDLIHEEVMFRVMFHTAFVHSNSLKLNRDEVDVIWDAKEQFPKDFRAEVLFLDADDVVPNLSTVTKSDDKIEIESNSTEEFFEVEEIFSNIVDVQEVKRDYDVQMVHANETDDIDLQAVWKEDADPPTFQRCKSFGGSQNLDKKMDCNVEAVKDITIDDVTFMTDEKADSGLHVVKDIVVDYGDKKPNPLLFSVNVLRRMGIKELIDNAYDKLEGVERKGYGEETAAIPDFETKVPAKKLDSDAWRLKYEKSQSLASRKQPSSTAKLINHTTIVKQKTKQPEDQDVLVRHAKPNTLSRWTPNEKESYINSMHVFYPPSRYTGASATSISSPTRDSYSYSTSKSASATLGLLLSTDTADEQKSNKVSPKKPLCSATEILTSKPQSPLGSPRLMPNSVLHQDPTLPLSPTTLLQPPALHANTSFLHASSPKSSFSPSSYSHINARSPPPPPPPPPPPPSSHVAPKSSALVCGNTPKHSAPPAPPPPPVRRAQPQLPPPQPPHSHGALLSPRLSNAGALPPPPPPPPPIQRAAPHLTQGRQALTSPTTCVVSSSLPSPICEAPSPPQPTTGPLPLVPFPSRPSGAMSPHPGAKGVSSSTDVKASSIVRGRGFSRLMGTGVGATVPQRSSLKPLHWSKVTRVLQGSLWEELQRSGDPESAPEFDVSELETLFSVIVPKPIVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEIELLKGYCGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIVEFRKSLNTVNSVCQEVKNSCKLKEILKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKMTLMHYLCKVLASKSPSLLDFHLDLGSLEAASKIQLKSLAEEMQAITKGLDKVKQELVASESDGPISETFHKTLKGFVTLAETEVESVTVLYSMAGRNADALALYFGEDPARCPFEQVTGTLFHFTRSFLKAHEENCKQLEMEMRRLRK 1298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47956296 47968326 + Maker00036723 Lcy5g2518 634333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2518 1298 Pfam Formin Homology 2 Domain 906 1278 IPR015425 -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 819 840 - -
Lcy5g2518 1298 SMART PTEN_C2_2 198 338 IPR014020 -
Lcy5g2518 1298 SUPERFAMILY Formin homology 2 domain (FH2 domain) 802 1297 - -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 710 883 - -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 760 787 - -
Lcy5g2518 1298 PANTHER FORMIN-J 1 1294 IPR051144 -
Lcy5g2518 1298 Coils Coil 1185 1205 - -
Lcy5g2518 1298 Gene3D - 205 336 - -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 798 814 - -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 642 697 - -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 726 745 - -
Lcy5g2518 1298 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Lcy5g2518 1298 ProSiteProfiles Formin homology-2 (FH2) domain profile. 902 1298 IPR015425 -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 661 675 - -
Lcy5g2518 1298 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Lcy5g2518 1298 SMART it6_source 902 1297 IPR015425 -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 841 866 - -
Lcy5g2518 1298 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Lcy5g2518 1298 Pfam C2 domain of PTEN tumour-suppressor protein 198 336 IPR014020 -
Lcy5g2518 1298 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Lcy5g2518 1298 Gene3D Formin, FH2 domain 903 1289 IPR042201 -
Lcy5g2518 1298 MobiDBLite consensus disorder prediction 710 725 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2518 K28090 - - csv:101221127 2072.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0173 Lcy-Chr2:1380744 Lcy5g2518 Lcy-Chr5:47956296 1.36E-286 dispersed
Lcy5g2518 Lcy-Chr5:47956296 Lcy9g1889 Lcy-Chr9:43958041 7.48E-290 dispersed
Lcy5g2518 Lcy-Chr5:47956296 Lcy5g2522 Lcy-Chr5:48002627 2.45E-23 proximal
Lcy12g0005 Lcy-Chr12:227898 Lcy5g2518 Lcy-Chr5:47956296 1.34E-47 transposed
Lcy2g0552 Lcy-Chr2:4730283 Lcy5g2518 Lcy-Chr5:47956296 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy7g1391 . 441 955 FH2 protein (formin) Gene Family AT3G25500 62.4 1.3e-161 568.2
Lcy8g0729 . 473 895 FH2 protein (formin) Gene Family AT3G25500 63.3 3.3e-141 500.4
Lcy2g2127 . 492 893 FH2 protein (formin) Gene Family AT3G25500 51.2 1.2e-103 375.6
Lcy12g2003 . 613 1092 FH2 protein (formin) Gene Family AT2G43800 58.1 9.0e-140 495.4
Lcy8g0729 . 473 911 FH2 protein (formin) Gene Family AT2G43800 54.6 4.1e-124 443.4
Lcy9g1230 . 460 609 FH2 protein (formin) Gene Family AT4G15200 64.9 2.1e-47 187.6
Lcy9g1230 . 464 900 FH2 protein (formin) Gene Family AT5G54650 68.9 5.1e-167 585.9
Lcy8g1463 . 1 347 FH2 protein (formin) Gene Family AT5G54650 61.5 1.0e-114 412.1
Lcy8g0729 . 29 914 FH2 protein (formin) Gene Family AT5G67470 56.9 3.7e-234 808.9
Lcy12g2003 . 605 1092 FH2 protein (formin) Gene Family AT5G67470 56.1 1.9e-129 461.1
Lcy7g1391 . 489 951 FH2 protein (formin) Gene Family AT5G67470 58.8 1.6e-128 458.0
Lcy2g2127 . 495 895 FH2 protein (formin) Gene Family AT5G67470 51.6 1.5e-105 381.7
Lcy7g0217 . 385 864 FH2 protein (formin) Gene Family AT1G59910 51.3 1.9e-124 444.5
Lcy8g0729 . 497 872 FH2 protein (formin) Gene Family AT5G48360 50.5 4.4e-90 330.1
Lcy9g1230 . 472 883 FH2 protein (formin) Gene Family AT3G05470 51.2 3.8e-106 383.6
Lcy8g0729 . 477 871 FH2 protein (formin) Gene Family AT3G05470 51.6 3.2e-105 380.6
Lcy12g1998 . 946 1257 FH2 protein (formin) Gene Family AT1G42980 50.5 6.9e-68 255.0
Lcy12g1998 . 1 1264 FH2 protein (formin) Gene Family AT1G31810 66.9 0.0e+00 1216.1
Lcy8g2223 . 47 217 FH2 protein (formin) Gene Family AT1G31810 53.2 2.2e-43 175.6
Lcy9g0003 . 47 172 FH2 protein (formin) Gene Family AT1G31810 60.3 4.7e-38 157.9
Lcy2g0552 . 1358 1679 FH2 protein (formin) Gene Family AT5G07650 74.2 6.3e-129 459.1
Lcy5g2518 . 985 1292 FH2 protein (formin) Gene Family AT5G07650 70.5 2.9e-118 423.7
Lcy2g0173 . 976 1294 FH2 protein (formin) Gene Family AT5G07650 62.2 6.2e-108 389.4
Lcy12g1998 . 930 1261 FH2 protein (formin) Gene Family AT5G07650 59.6 1.1e-107 388.7
Lcy9g1889 . 1092 1397 FH2 protein (formin) Gene Family AT5G07650 61.9 1.5e-101 368.2
Lcy8g2223 . 43 217 FH2 protein (formin) Gene Family AT5G07650 60.0 8.5e-49 193.0
Lcy9g0003 . 47 186 FH2 protein (formin) Gene Family AT5G07650 63.6 1.2e-42 172.6
Lcy4g0011 . 46 165 FH2 protein (formin) Gene Family AT5G07650 65.1 7.4e-37 153.3
Lcy2g0552 . 1285 1669 FH2 protein (formin) Gene Family AT5G07770 69.9 1.1e-141 501.1
Lcy5g2518 . 898 1292 FH2 protein (formin) Gene Family AT5G07770 62.6 1.2e-127 454.5
Lcy2g0173 . 899 1287 FH2 protein (formin) Gene Family AT5G07770 57.3 6.0e-116 415.6
Lcy12g1998 . 866 1255 FH2 protein (formin) Gene Family AT5G07770 55.8 5.1e-115 412.5
Lcy9g1889 . 1016 1389 FH2 protein (formin) Gene Family AT5G07770 56.1 1.4e-109 394.4
Lcy8g2223 . 47 217 FH2 protein (formin) Gene Family AT5G07770 55.6 4.1e-40 163.7
Lcy9g0003 . 47 172 FH2 protein (formin) Gene Family AT5G07770 65.9 6.5e-38 156.4
Lcy9g1889 . 1008 1397 FH2 protein (formin) Gene Family AT3G32400 74.0 1.5e-160 563.5
Lcy2g0173 . 883 1296 FH2 protein (formin) Gene Family AT3G32400 66.3 5.0e-148 521.9
Lcy12g1998 . 866 1260 FH2 protein (formin) Gene Family AT3G32400 66.0 3.5e-141 499.2
Lcy2g0552 . 1285 1679 FH2 protein (formin) Gene Family AT3G32400 65.2 1.0e-140 497.7
Lcy5g2518 . 878 1298 FH2 protein (formin) Gene Family AT3G32400 58.8 2.7e-133 473.0
Lcy8g2223 . 47 217 FH2 protein (formin) Gene Family AT3G32400 53.2 9.7e-43 172.2
Lcy9g0003 . 47 172 FH2 protein (formin) Gene Family AT3G32400 61.9 2.9e-39 160.6
Lcy8g2223 . 47 215 FH2 protein (formin) Gene Family AT2G25050 53.8 3.0e-42 171.8
Lcy9g0003 . 47 167 FH2 protein (formin) Gene Family AT2G25050 62.8 6.9e-39 160.6
Lcy2g0552 . 1286 1679 FH2 protein (formin) Gene Family AT5G07780 63.3 1.6e-124 443.7
Lcy5g2518 . 909 1298 FH2 protein (formin) Gene Family AT5G07780 57.1 3.5e-111 399.4
Lcy12g1998 . 867 1256 FH2 protein (formin) Gene Family AT5G07780 52.7 5.1e-102 369.0
Lcy2g0173 . 906 1287 FH2 protein (formin) Gene Family AT5G07780 53.8 1.2e-100 364.4
Lcy9g1889 . 1017 1390 FH2 protein (formin) Gene Family AT5G07780 52.3 5.4e-96 349.0
Lcy2g0552 . 1 1688 FH2 protein (formin) Gene Family AT5G07740 60.7 0.0e+00 1102.8
Lcy8g2223 . 47 216 FH2 protein (formin) Gene Family AT5G07740 65.9 1.3e-51 203.4
Lcy9g0003 . 47 172 FH2 protein (formin) Gene Family AT5G07740 72.2 2.6e-44 179.1
Lcy4g0011 . 46 165 FH2 protein (formin) Gene Family AT5G07740 69.0 4.3e-39 161.8
Lcy2g0552 . 1357 1686 FH2 protein (formin) Gene Family AT5G07760 73.8 2.9e-127 453.8
Lcy5g2518 . 984 1298 FH2 protein (formin) Gene Family AT5G07760 69.6 3.0e-116 417.2
Lcy2g0173 . 975 1294 FH2 protein (formin) Gene Family AT5G07760 64.2 4.7e-109 393.3
Lcy12g1998 . 940 1261 FH2 protein (formin) Gene Family AT5G07760 61.3 2.8e-106 384.0
Lcy9g1889 . 1091 1405 FH2 protein (formin) Gene Family AT5G07760 61.4 2.7e-101 367.5
Lcy8g2223 . 47 217 FH2 protein (formin) Gene Family AT5G07760 62.6 1.6e-48 192.2
Lcy9g0003 . 47 172 FH2 protein (formin) Gene Family AT5G07760 73.0 2.8e-45 181.4
Lcy4g0011 . 46 165 FH2 protein (formin) Gene Family AT5G07760 69.0 6.0e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82