Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2530 ATGAACCGTGCATTCAATTCATACCCAGATGAAAATTATGCAAATATTAGAAGATCGATGAGGCAGACTGAGGATGATCACAAGAGCGAGAGCCTATCGGACAAGGATCCGCACGGTGATTTAAAGTGCAACCAAGAAATGAGATGTGGGTTCAGTTCGATTCGAGTAATGGGTATGTTTTTGGTTTTAATGATGTTCATTTCTGTGATCTTTTCGGTCTCTGTGGTTCTTAGAGATCCGCCATCCGATGCTGTAATTGAAGGTTCAGATGTGTGGATTCCTCAGTGGAACTCTGACCCAGTAGATTCTAAGGATGGAGATCTTCATACAGTTACACAGTCAGTTGATAAACTTCTTAGTGGCCTTCTTTCTGCCAAACATGGGGTAGATTCTTGTCACAGTAGGTACAGTTCATTTGCTTATCAGCACAAGCTGGCTCATGAACCCTCTTCTTACCTGATCTCCAAATTGCGGAGTTATGAAGATCTTCATAAGCGTTGTGGAGTTTATACCGAATCTTACAACAAAACTTTGGAGCAGCTTAGGTCTAATGGTAGTAGCAGCTCCTCAGATTGTAAATATCTTTTGTGGATTTCCTTCAGTGGGTTAGGGAATAGAATACTAACTCTCGCTTCGGCATTTCTGTATGCTCTCCTCACAAATCGTGTTCTACTTGTTGATCCTGGAACTGACATGGCTGATCTCTTCTGTGAACCATTTCCTGAGGTTTCCTGGTTTCTTCCCCAAGATTTCCCATTAAAAAATGAGTTCAGTAACTTCAACCAGAACTCTCCTAATTGCTATGGGAAAATAATGAAGAATAGCATGACAACAGATTCAAGTGGAATGATCTTGCCATCTGTTGTTTATCTTCACTTGGTCCATGATTATGATGATGATGATAAGCTGTTTTTCTGTGATCAAGACCAAGCTCTTCTGCAGAAATCACCTTGGCTTGTTATGAAAACAGACAACTACTTTGTCCCGTCTCTCTTTTTGATCCCGTCATTTGAGAAAGAACTTAATGATCTTTTCCCAAATAAAGATACAGTTTTCCACTTCTTGGGTCGATATCTGTTTCACCCCACGAATTCGGTTTGGGGACTGATTACGAGATATTATCAAGCTTACTTGGCTAGAGCTAGTGAAAGAATAGGCATTCAGATTAGAGTGTTTGATACAGGGACTGGACCTTTTCAACACATCCTGGATCAGGTTCTCGCCTGTACCTTGAAGGAGAATCTGTTGCCACAAACCGAAAGGCAAACGAATGTCATCGGTCCAGCTAGTAATCAAAAGTCGAAGGCCGTGCTGATAACTTCCCTGAGCGCTGGTTACTTAGAGAAGCTTAGAGACATTTACTGGGAGAATCCAACAGTGACGGGAGAGAGAATTAGTTTCTACCAACCAAGTCATGAGGAACACCAGCAAACTGAGAAGAGTATACATAATCAGAAGGCATTGGCAGAGATGTATTTGTTAAGTACAACTGATGTATTGGTCACCAGCGCATGGTCGACCTTCGGATATGTCGCTCAAGGTCTTGGCGGTCTGAAACCATGGATGTTATACAAACCCGAGAATCGTACTGCACCAGATCCACCTTGCCGTCGAGCCATGTCCATGGAGCCCTGTTTCCATGCTCCTCCTTTCTATGACTGCAAGGCTAAGAAAGGAGTGGACACTGGTAAACTTGTCCCTCATGTGAGACATTGTGAGGACATGGCCTGGGGGCTTAAGCTGGTTGATCATATATGA 1758 42.78 MNRAFNSYPDENYANIRRSMRQTEDDHKSESLSDKDPHGDLKCNQEMRCGFSSIRVMGMFLVLMMFISVIFSVSVVLRDPPSDAVIEGSDVWIPQWNSDPVDSKDGDLHTVTQSVDKLLSGLLSAKHGVDSCHSRYSSFAYQHKLAHEPSSYLISKLRSYEDLHKRCGVYTESYNKTLEQLRSNGSSSSSDCKYLLWISFSGLGNRILTLASAFLYALLTNRVLLVDPGTDMADLFCEPFPEVSWFLPQDFPLKNEFSNFNQNSPNCYGKIMKNSMTTDSSGMILPSVVYLHLVHDYDDDDKLFFCDQDQALLQKSPWLVMKTDNYFVPSLFLIPSFEKELNDLFPNKDTVFHFLGRYLFHPTNSVWGLITRYYQAYLARASERIGIQIRVFDTGTGPFQHILDQVLACTLKENLLPQTERQTNVIGPASNQKSKAVLITSLSAGYLEKLRDIYWENPTVTGERISFYQPSHEEHQQTEKSIHNQKALAEMYLLSTTDVLVTSAWSTFGYVAQGLGGLKPWMLYKPENRTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGVDTGKLVPHVRHCEDMAWGLKLVDHI 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48092703 48095728 + Maker00036232 Lcy5g2530 634345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2530 585 MobiDBLite consensus disorder prediction 16 39 - -
Lcy5g2530 585 FunFam Galactoside 2-alpha-L-fucosyltransferase 190 241 - -
Lcy5g2530 585 Gene3D - 189 242 - -
Lcy5g2530 585 PANTHER FUCOSYLTRANSFERASE 2-RELATED 49 583 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0008417(PANTHER)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
Lcy5g2530 585 Pfam Xyloglucan fucosyltransferase 109 555 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
Lcy5g2530 585 MobiDBLite consensus disorder prediction 17 39 - -
Lcy5g2530 585 Gene3D - 369 541 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1284 Lcy-Chr5:30380150 Lcy5g2530 Lcy-Chr5:48092703 2.96E-245 dispersed
Lcy5g2530 Lcy-Chr5:48092703 Lcy6g0711 Lcy-Chr6:6908455 2.34E-175 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2530 K13681 - csv:101219153 1056.97