Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2536 ATGGCAGTTCTTGGGATATTGTTAGTGGGGTTTCTTTCTTTCTGCTCATTCGTTCATGTTTATGGAGGAAACTGGATCAATGGCGCTCATGCCACTTTCTATGGAGGCCCCGATGCCTCTGGTACATTGGGTGGGGCTTGTGGATATGGAAATGTATATAGCGAGAACTATGGGACTAAAACGACGGCGTTGAGTGCAGCCTTGTTCGACAATGGGCTGAGCTGTGGGGCTTGCTTTGAAGTCAAGTGTGTGAATGATCGAAAGTGGTGCCTCCCCGGCTCCGTTGTGGTCACCACCACCAACTTCTGTCCTCCCGGTGGTTGGTGCGATCCTTCGCTCCGCCACTTCGATCTCTCTCAACCTGCCTTCCAAAGCATCGCTCAACCCATTGCCGGGGTCGTCCCCGTTGCTTATAAAAGGGTTCGATGTGCAAGAAGGGGAGGAATTAAGTTCAGAATTGAGGGCAATCCATACTTCAATTTGGTGCTCATAAGCAATGTGGGAGGTGCAGGAGATGTGCATGCCGTTTACATTAAAGGGTCTAGGACTGGTTGGAGGGCCATGGTCAGAAATTGGGGTCAGAACTGGGAGAGCAACGATTACCTTGTAGGACAAGCCCTGTCTTTTAAGGTCACCACCAGTGATGGTCGCTCGGTTGTGTCCTACAATGTTGCCCCTTCAGGATGGTCGTTTGGACAAAGCTTCTTTGGCAAACAGTTCACTTAG 726 50.41 MAVLGILLVGFLSFCSFVHVYGGNWINGAHATFYGGPDASGTLGGACGYGNVYSENYGTKTTALSAALFDNGLSCGACFEVKCVNDRKWCLPGSVVVTTTNFCPPGGWCDPSLRHFDLSQPAFQSIAQPIAGVVPVAYKRVRCARRGGIKFRIEGNPYFNLVLISNVGGAGDVHAVYIKGSRTGWRAMVRNWGQNWESNDYLVGQALSFKVTTSDGRSVVSYNVAPSGWSFGQSFFGKQFT 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48146177 48147973 + Maker00036366 Lcy5g2536 634351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2536 241 SUPERFAMILY Barwin-like endoglucanases 25 166 IPR036908 -
Lcy5g2536 241 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Lcy5g2536 241 FunFam Expansin 148 240 - -
Lcy5g2536 241 Gene3D - 15 144 IPR036908 -
Lcy5g2536 241 SUPERFAMILY PHL pollen allergen 145 236 IPR036749 -
Lcy5g2536 241 Pfam Lytic transglycolase 61 138 IPR009009 -
Lcy5g2536 241 Gene3D - 148 240 IPR036749 -
Lcy5g2536 241 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 237 IPR007117 -
Lcy5g2536 241 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576(InterPro)
Lcy5g2536 241 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576(InterPro)
Lcy5g2536 241 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Lcy5g2536 241 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Lcy5g2536 241 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Lcy5g2536 241 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Lcy5g2536 241 SMART dpbb_1 61 138 IPR007112 -
Lcy5g2536 241 CDD DPBB_EXPA_N 25 143 - -
Lcy5g2536 241 PANTHER EXPANSIN-A15 12 240 IPR002963 GO:0009664(InterPro)
Lcy5g2536 241 PRINTS Expansin signature 194 215 IPR002963 GO:0009664(InterPro)
Lcy5g2536 241 PRINTS Expansin signature 147 159 IPR002963 GO:0009664(InterPro)
Lcy5g2536 241 PRINTS Expansin signature 106 123 IPR002963 GO:0009664(InterPro)
Lcy5g2536 241 PRINTS Expansin signature 159 180 IPR002963 GO:0009664(InterPro)
Lcy5g2536 241 PRINTS Expansin signature 95 105 IPR002963 GO:0009664(InterPro)
Lcy5g2536 241 PRINTS Expansin signature 123 136 IPR002963 GO:0009664(InterPro)
Lcy5g2536 241 PRINTS Expansin signature 83 94 IPR002963 GO:0009664(InterPro)
Lcy5g2536 241 PRINTS Expansin signature 223 239 IPR002963 GO:0009664(InterPro)
Lcy5g2536 241 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Lcy5g2536 241 Pfam Expansin C-terminal domain 149 226 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2536 Lcy-Chr5:48146177 Lcy7g1071 Lcy-Chr7:11465885 3.05E-119 dispersed
Lcy10g2014 Lcy-Chr10:44274019 Lcy5g2536 Lcy-Chr5:48146177 9.61E-130 wgd
Lcy2g0567 Lcy-Chr2:4877217 Lcy5g2536 Lcy-Chr5:48146177 7.16E-125 wgd
Lcy5g2536 Lcy-Chr5:48146177 Lcy7g0294 Lcy-Chr7:2530779 1.11E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2536 - - - 0.0