Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2537 ATGGCAACTGTCATGACACAGGCTTCAGTCGCCGTCTTTAGGCCATGCGCGTCAAGAACGAGGTTCCTTTCGGGTTCGTCGGAAAAGTTTAACAGAGCTTTGTCTGTTAAGCCAACAACTTCTTCAATTCCCAGTTCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTACCAGGTTTGCCATCCCCAGCTTACCTTGATGGCAGTCTTCCAGGTGATAACGGATTTGATCCTCTAGGACTTGCAGAGGACCCTGAGAACTTGAAGTGGTATGTGCAAGCAGAGCTTGTGAATGGTCGGTGGGCGATGCTCGGAGTTGCAGGTATGCTATTGCCTGAAGTCTTCACAAGTTTTGGAATCATCAACGTACCGAAATGGTACGATGCTGGGAAAGCCGAGTATTTCGCATCATCGTCAACTCTCTTTGTGATCGAGTTCATTCTGTTCCACTATGTGGAAATCAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAACAATACAGCTTGCCACCAAATGATGTTGGATATCCAGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAAGGAAAAGGAGATTGCTAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTCATTGTTCAACACAATGTGACAGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTTCAGACCCATGGCACAACACCATTATCCAAACACTAAGGGGATAA 756 45.5 MATVMTQASVAVFRPCASRTRFLSGSSEKFNRALSVKPTTSSIPSSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNGRWAMLGVAGMLLPEVFTSFGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48148995 48151369 + Maker00036888 Lcy5g2537 634352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2537 251 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
Lcy5g2537 251 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Lcy5g2537 251 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Lcy5g2537 251 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 8 245 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Lcy5g2537 251 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1770 Lcy-Chr10:42098067 Lcy5g2537 Lcy-Chr5:48148995 1.49E-47 dispersed
Lcy5g2537 Lcy-Chr5:48148995 Lcy9g2374 Lcy-Chr9:48038279 3.37E-24 dispersed
Lcy10g1345 Lcy-Chr10:36589985 Lcy5g2537 Lcy-Chr5:48148995 4.75E-26 transposed
Lcy13g2071 Lcy-Chr13:39623077 Lcy5g2537 Lcy-Chr5:48148995 2.64E-69 transposed
Lcy2g0986 Lcy-Chr2:9184473 Lcy5g2537 Lcy-Chr5:48148995 4.26E-68 transposed
Lcy2g1328 Lcy-Chr2:14718579 Lcy5g2537 Lcy-Chr5:48148995 6.34E-50 transposed
Lcy7g0043 Lcy-Chr7:335278 Lcy5g2537 Lcy-Chr5:48148995 3.55E-08 transposed
Lcy2g0568 Lcy-Chr2:4882718 Lcy5g2537 Lcy-Chr5:48148995 8.66E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2537 K08910 - csv:101218675 492.656