Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2557 ATGGAAGGAAGTGACCAACTTCACTATCATCATCACACCCATCGCTCAACTACTACCACTTTTCCTCTCCAATTGTTAGATCAGAAGAAGGAATTATACGATTCCAATTCTCAATCGGTTATTGTGGAGAGCAGCTCCAACTCCAAGAATAATAATAAGCCCTCTCCCAATCCCAAGAGGACCTCCACCAAGGACCGCCACACCAAAGTGGATGGCCGCGGCCGCCGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTCTTCCAACTCACCCGCGAGCTTGGCCACAAGTCCGATGGCGAAACCATCGAGTGGCTTCTTCAGCAGGCCGAGCCTGCTGTCATTGCTGCCACCGGTACTGGTACCATTCCTGCCAACTTCAACTCTCTCAATACCTCCTTGAGAAGATCCGCTACCACCATTTCTTTACCCTCCCAACTAACATCTTCCTCTTACTACCACCCCGCAATGATGGCATTCAACTCTCAACCAATGAACATGGGTCCAATGACGCAAGCAAAAGATCACTTGCCTGATCCGCAGCGTCAAATGGGGAGCTATCTGCTGCAACCGAGCACAGGGGCAATCCCGGCGAATATTCCGGCCAACTTTTGGATGCTTTCCGACGGCAGCAGCCAACTACTCGGCGGCAGAGGCGAGTCTTTATGGAGGCTTCCGTCGTCGGGCAACCAAGAGGACGCTTTATACAGAGGACAAAGCTCCGGTGGGTTACGTTTATCCAACCTCCCTGCTCCGTTGACGCTGCTCCCGGGGAAGCCAATGGGGCCGAGTGGGGGAGGCGGCGGAAGCTTGAACGAGGGACAGTTGAATGTCTACGGCGGGGCGCAGGGGGCGGGGCCGGACACCGGAGTGTCGTAA 879 54.61 MEGSDQLHYHHHTHRSTTTTFPLQLLDQKKELYDSNSQSVIVESSSNSKNNNKPSPNPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATTISLPSQLTSSSYYHPAMMAFNSQPMNMGPMTQAKDHLPDPQRQMGSYLLQPSTGAIPANIPANFWMLSDGSSQLLGGRGESLWRLPSSGNQEDALYRGQSSGGLRLSNLPAPLTLLPGKPMGPSGGGGGSLNEGQLNVYGGAQGAGPDTGVS 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48286621 48288207 + Maker00036395 Lcy5g2557 634372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2557 292 MobiDBLite consensus disorder prediction 1 21 - -
Lcy5g2557 292 MobiDBLite consensus disorder prediction 36 58 - -
Lcy5g2557 292 ProSiteProfiles TCP domain profile. 63 117 IPR017887 -
Lcy5g2557 292 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 40 183 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lcy5g2557 292 Pfam TCP family transcription factor 61 155 IPR017887 -
Lcy5g2557 292 MobiDBLite consensus disorder prediction 59 76 - -
Lcy5g2557 292 MobiDBLite consensus disorder prediction 248 292 - -
Lcy5g2557 292 MobiDBLite consensus disorder prediction 36 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2557 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1497 Lcy-Chr3:41843971 Lcy5g2557 Lcy-Chr5:48286621 4.64E-22 dispersed
Lcy5g2557 Lcy-Chr5:48286621 Lcy7g0833 Lcy-Chr7:8212236 3.10E-33 dispersed
Lcy2g0580 Lcy-Chr2:4966705 Lcy5g2557 Lcy-Chr5:48286621 2.46E-75 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1073 . 43 264 TCP Transcription Factor Family AT5G23280 62.9 2.3e-64 243.0
Lcy7g0833 . 36 261 TCP Transcription Factor Family AT5G23280 59.1 2.2e-59 226.5
Lcy13g0617 . 3 344 TCP Transcription Factor Family AT2G45680 51.2 6.0e-71 265.4
Lcy5g2557 . 59 158 TCP Transcription Factor Family AT3G47620 75.7 7.8e-37 152.5
Lcy10g0080 . 115 380 TCP Transcription Factor Family AT3G27010 59.2 1.9e-60 230.3
Lcy3g1497 . 1 180 TCP Transcription Factor Family AT3G27010 51.0 4.6e-38 156.0
Lcy10g1073 . 1 262 TCP Transcription Factor Family AT5G08330 57.7 1.4e-66 250.4
Lcy7g0833 . 8 258 TCP Transcription Factor Family AT5G08330 54.8 2.5e-60 229.6
Lcy3g0222 . 30 141 TCP Transcription Factor Family AT3G02150 68.1 3.3e-37 153.3
Lcy4g0720 . 6 168 TCP Transcription Factor Family AT2G31070 53.6 6.2e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20198 None None None None Lcy TF