Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2557 ATGGAAGGAAGTGACCAACTTCACTATCATCATCACACCCATCGCTCAACTACTACCACTTTTCCTCTCCAATTGTTAGATCAGAAGAAGGAATTATACGATTCCAATTCTCAATCGGTTATTGTGGAGAGCAGCTCCAACTCCAAGAATAATAATAAGCCCTCTCCCAATCCCAAGAGGACCTCCACCAAGGACCGCCACACCAAAGTGGATGGCCGCGGCCGCCGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTCTTCCAACTCACCCGCGAGCTTGGCCACAAGTCCGATGGCGAAACCATCGAGTGGCTTCTTCAGCAGGCCGAGCCTGCTGTCATTGCTGCCACCGGTACTGGTACCATTCCTGCCAACTTCAACTCTCTCAATACCTCCTTGAGAAGATCCGCTACCACCATTTCTTTACCCTCCCAACTAACATCTTCCTCTTACTACCACCCCGCAATGATGGCATTCAACTCTCAACCAATGAACATGGGTCCAATGACGCAAGCAAAAGATCACTTGCCTGATCCGCAGCGTCAAATGGGGAGCTATCTGCTGCAACCGAGCACAGGGGCAATCCCGGCGAATATTCCGGCCAACTTTTGGATGCTTTCCGACGGCAGCAGCCAACTACTCGGCGGCAGAGGCGAGTCTTTATGGAGGCTTCCGTCGTCGGGCAACCAAGAGGACGCTTTATACAGAGGACAAAGCTCCGGTGGGTTACGTTTATCCAACCTCCCTGCTCCGTTGACGCTGCTCCCGGGGAAGCCAATGGGGCCGAGTGGGGGAGGCGGCGGAAGCTTGAACGAGGGACAGTTGAATGTCTACGGCGGGGCGCAGGGGGCGGGGCCGGACACCGGAGTGTCGTAA 879 54.61 MEGSDQLHYHHHTHRSTTTTFPLQLLDQKKELYDSNSQSVIVESSSNSKNNNKPSPNPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATTISLPSQLTSSSYYHPAMMAFNSQPMNMGPMTQAKDHLPDPQRQMGSYLLQPSTGAIPANIPANFWMLSDGSSQLLGGRGESLWRLPSSGNQEDALYRGQSSGGLRLSNLPAPLTLLPGKPMGPSGGGGGSLNEGQLNVYGGAQGAGPDTGVS 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48286621 48288207 + Maker00036395 Lcy5g2557 634372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2557 292 MobiDBLite consensus disorder prediction 1 21 - -
Lcy5g2557 292 MobiDBLite consensus disorder prediction 36 58 - -
Lcy5g2557 292 ProSiteProfiles TCP domain profile. 63 117 IPR017887 -
Lcy5g2557 292 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 40 183 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lcy5g2557 292 Pfam TCP family transcription factor 61 155 IPR017887 -
Lcy5g2557 292 MobiDBLite consensus disorder prediction 59 76 - -
Lcy5g2557 292 MobiDBLite consensus disorder prediction 248 292 - -
Lcy5g2557 292 MobiDBLite consensus disorder prediction 36 77 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1497 Lcy-Chr3:41843971 Lcy5g2557 Lcy-Chr5:48286621 4.64E-22 dispersed
Lcy5g2557 Lcy-Chr5:48286621 Lcy7g0833 Lcy-Chr7:8212236 3.10E-33 dispersed
Lcy2g0580 Lcy-Chr2:4966705 Lcy5g2557 Lcy-Chr5:48286621 2.46E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20198 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2557 - - - 0.0