Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2573 ATGGGGAGGAAGAAGAGAACTGAAGGTGGTGGTGAGAGCTCTGAGTCTCAGGATGTTCGTAGCTCCCAACGATCAGCTGATAGGAGAGACTTCCCACAGCAACATGGTGGCAGTGGATACCAGGGTCAGGGTGGAAGAGGTTGGGCTTCTCAGGGGGGACGTGGAGGAGGTCAAGGTGGTGGCCGTGGCCGAGGAACGTCTCAACATCAGCACTATGGAGGACCTCCCGATTACCAAGGCAGGGGTAGAGGTGGGCCATATCAGCATGGAGGACGCAGTAACTATGGTGGTGGTAATCGCGGTGGCATGGGTGGTGGTGGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGCCCATCCAGGCCACCAGTTCCCGAGCTGCACCAAGCAACCCCAGTGTATCAAGGTGGGGTGACTCAGCCGATCTCATCTGCGGCGAGTTCTTCCTCCCACCCACCTGATACTTCATCGATAGAACAACAATTTCAGAAAATTTCCATTCAGCAGGAACCTGGTACTCAAAGCCAAGCAATTCAACCTGCACCGCCGTCTAGTAAATCTATGAGATTCCCTCTAAGACCAGGAAAGGGTAGCTCTGGCATAAGGTGTATTGTTAAGGCTAACCACTTCTTTGCTGAGCTGCCAGACAAAGATCTTCATCAGTATGATGTGAGCATTCTCTTCTGTACTGCTGCTAATGTTACTATTACACCTGAAGTCACTTCGCGTGTCTACAATCGAGCTGTAATGGAGCAGCTAGTGAAATTATACAGGGTTTCTCACCTTGGAGATCGTCTTCCTGCCTATGATGGAAGAAAAAGTTTATACACAGCTGGTCCTCTTCCTTTCATATCAAATGAGTTTAGAATCACTCTTTTTGATGAAGAAGATGGATCAGGAGGACAAAGACGGGAGAGGGAATTCAAAGTTGTGATCAAATTGGCTGCTCGTGCGGATCTGCACCATTTAGGACTCTTTCTCCAGGGCAGACAGGCTGATGCCCCTCAGGAAGCCCTTCAAGTTCTGGATATTGTTTTACGCGAATTGCCCACTTCAAGGCATGGCTATTACTGTACACCTCTGTATTGTCCAGTGGGCCGATCATTTTACTCTCCAGACCTTGGCAGACGTCAGACACTAGGTGAGGGGCTGGAAAGCTGGCGTGGCTTTTATCAGAGTATCCGTCCTACTCAAATGGGGCTCTCTCTAAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTCATTGATTTTGTGACTCAGCTTCTCAACCGTGATGTATCATCCAGACCATTATCTGATGCTGACCGTGTAAAGATCAAGAAGGCTCTTCGAGGTGTCAAGGTCGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATATCTGGTTTGACATCACAAGCAACCCGAGAGCTTACTTTCCCAGTTGATGAAAGAGGTACTATGAAATCAGTGGTGGAGTACTTCTCTGAAACATATGGGTTTGTTATTCAACATACTCAGTGGCCTTGTCTTCAAGTAGGGAACCAACAGAGACCTAACTATCTACCTATGGAAGTATGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTCAATGAAAGACAGATAACTGCTCTCCTCAAGGTTACATGCCAACGACCACAAGATAGAGAAACAGACATTATGCAGACGGTACGTCATAATGCATATCACAATGATCCATATGCAAAGGAGTTTGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGCATTCTTCCTGCACCATGGCTAAAATATCACGACACTGGCAGAGAAAAAGATTGCTTGCCACAAGTTGGACAGTGGAACATGATGAATAAGAAAATGTTCAATGGTGGTACTGTAAACAATTGGATGTGCATAAATTTTTCCCGCTATGTGCAAGACAGTGTTACCCGTGGGTTTTGTTATGAACTTGCTCAGATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATTTTTGCTCGTCCTGATCATGTGGAAAAGGCCCTTAAAACTCGGTATCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATCTGCTTATTGTTGTTTTGCCAGATAACAATGGATCTCTTTATGGTGATTTAAAACGAATCTGTGAAACAGATCTTGGCCTCGTTTCCCAGTGCTGTTTGACTAAGCATGTCTTCAGAATGAGTAAACAGTATTTGGCCAATGTGGCCTTGAAAATAAATGTTAAGGTTGGCGGAAGGAATACAGTACTCGTTGATGCGTTATCTAGGCGCATACCCTTGGTTAGTGACCGGCCTACCATTATTTTTGGTGCTGATGTAACCCATCCTCACCCAGGGGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCGGAAGTTACAAAATATGCTGGTTTGGTCAGTGCTCAAGCCCATAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTAAGGGGGACAGTCACGGGTGGAATGATCAAGGAACTCCTTATCTCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGCATCATATTTTACAGGCATTTTCTTTTATTTCTTATCTATTGTCTGGATGGTGTTAGCGAAGGACAATTCTACCAAGTTTTGTTGCATGAGCTGGATGCCATTCGAAAGGCATGTGCTTCTTTGGAACCAAACTATCAACCTCCAGTGACTTTCGTTGTGGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATTCTGATCGCCATGCGGTTGACAAGAGTGGGAACATATTGCCTGGTACGGTTGTTGACTCCAAAATTTGTCATCCTACCGAGTTTGATTTCTACCTGTGCAGCCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTGTGGGATGAGAACAAGTTCACGGCTGACGGATTGCAGACTCTAACGAATAACCTTTGTTACACGTATGCAAGGTGTACTCGCTCTGTTTCTATTGTGCCCCCAGCGTACTATGCTCATCTTGCTGCATTCCGAGCTCGTTTTTATATGGAACCTGAGACCTCTGACAGTGGGTCAATTAGCAGTGATGCTGCTGCTGGACGTGGTGGTGGTGCTGGTGGTGCTCGCAGTACACGGGCACCGGGTTTGAATGCTGCTGTTCGACCTTTGCCAGCTCTGAAAGAGAATGTTAAGAGGGTTATGTTCTATTGTTGA 3273 46.38 MGRKKRTEGGGESSESQDVRSSQRSADRRDFPQQHGGSGYQGQGGRGWASQGGRGGGQGGGRGRGTSQHQHYGGPPDYQGRGRGGPYQHGGRSNYGGGNRGGMGGGGGGIGGGPSSGGPSRPPVPELHQATPVYQGGVTQPISSAASSSSHPPDTSSIEQQFQKISIQQEPGTQSQAIQPAPPSSKSMRFPLRPGKGSSGIRCIVKANHFFAELPDKDLHQYDVSILFCTAANVTITPEVTSRVYNRAVMEQLVKLYRVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRHGYYCTPLYCPVGRSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFSETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPQDRETDIMQTVRHNAYHNDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFRMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRHFLLFLIYCLDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSDAAAGRGGGAGGARSTRAPGLNAAVRPLPALKENVKRVMFYC 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48432559 48439066 + Maker00036833 Lcy5g2573 634388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2573 1090 SUPERFAMILY Ribonuclease H-like 701 1037 IPR012337 -
Lcy5g2573 1090 Gene3D paz domain 409 534 - -
Lcy5g2573 1090 FunFam Protein argonaute-2 409 535 - -
Lcy5g2573 1090 Pfam Argonaute linker 1 domain 364 414 IPR014811 -
Lcy5g2573 1090 CDD Piwi_ago-like 574 1036 IPR045246 -
Lcy5g2573 1090 SMART PAZ_2_a_3 420 552 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lcy5g2573 1090 Pfam PAZ domain 419 546 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lcy5g2573 1090 CDD PAZ_argonaute_like 415 529 - -
Lcy5g2573 1090 FunFam protein argonaute 10-like 775 1090 - -
Lcy5g2573 1090 Pfam N-terminal domain of argonaute 203 346 IPR032474 -
Lcy5g2573 1090 SUPERFAMILY PAZ domain 410 570 IPR036085 GO:0005515(InterPro)
Lcy5g2573 1090 FunFam Argonaute 10 594 769 - -
Lcy5g2573 1090 Pfam Mid domain of argonaute 613 688 IPR032473 -
Lcy5g2573 1090 ProSiteProfiles Piwi domain profile. 706 1037 IPR003165 GO:0003676(InterPro)
Lcy5g2573 1090 SMART DUF1785_2 363 415 IPR014811 -
Lcy5g2573 1090 Gene3D - 594 769 - -
Lcy5g2573 1090 SMART Piwi_a_2 706 1037 IPR003165 GO:0003676(InterPro)
Lcy5g2573 1090 ProSiteProfiles PAZ domain profile. 417 530 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lcy5g2573 1090 MobiDBLite consensus disorder prediction 1 193 - -
Lcy5g2573 1090 MobiDBLite consensus disorder prediction 1042 1066 - -
Lcy5g2573 1090 Pfam Glycine-rich region of argonaut 73 183 IPR024357 -
Lcy5g2573 1090 Pfam Argonaute linker 2 domain 556 602 IPR032472 -
Lcy5g2573 1090 Pfam Piwi domain 707 1036 IPR003165 GO:0003676(InterPro)
Lcy5g2573 1090 MobiDBLite consensus disorder prediction 133 183 - -
Lcy5g2573 1090 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 191 1043 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Lcy5g2573 1090 Gene3D - 775 1090 IPR036397 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1589 Lcy-Chr11:39701497 Lcy5g2573 Lcy-Chr5:48432559 0 dispersed
Lcy2g0780 Lcy-Chr2:6929451 Lcy5g2573 Lcy-Chr5:48432559 2.68E-80 dispersed
Lcy5g1034 Lcy-Chr5:20064266 Lcy5g2573 Lcy-Chr5:48432559 2.73e-317 dispersed
Lcy5g2573 Lcy-Chr5:48432559 Lcy7g0311 Lcy-Chr7:2662434 1.78E-192 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2573 K11593 - csv:101212130 1860.5