Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2583 ATGGCTCAGACGGCAAGTCGATCCAAATTGCGGTGGGGAGAGCTAGATGACGACGACGGCGATCTCGACTTTCTCTTACCGCCGAAGAAAATTATCGGCCCAGACGAGAACGGCTTGAAGAAGATTATCGAATATCAGTTTAACGAAGAGGGTAACAAAGTCAAGATCACAACCACCACGCGCACTCGCAAGCTCGCCCATGCTCGCCTCAGTAAACACGCCATTGAGCGCCGATCTTGGGCCAAGTTCGGCGACGCTGTGCACGAAGACGTGGGCAGCCGCCTCACTATGGTCTCCACTGAGGAGATCCTCCTAGAACGCCCTCGTGCTCCTGGTAGCAAACCAGAAGAGCCAAAGGTTGCAGGAGACCCTCTAGCTCAACTTGGAAAAGGGGGTGCTGTTCTTATGGTTTGTCGAACTTGTGGCAAAAAGGGTGACCACTGGACCTCAAGGTGTCCTTACAAAGATTTGGCACCACAAGGTGAGGGATTGGATAAGACTGCCGCACCAGAGGCTACAGCTGCTGCTCCTGGTGCAACGAAGGGAGCATATGTTCCTCCAGGTATGAGAGCAGGGGCAGACCGGACTGGAACCGATATGAGACGCAGGAACGACGAAAACTCTGTTCGTGTCACCAACCTTTCAGAGGACACAAGAGAGCCCGACCTGCTTGAGCTTTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCAGTTGATCAAAAGACTGGTATGAGCAGAGGATTTGGATTCGTAAACTTTGTGAACCGTGAGGATGCTCAAAGAGCAATCAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCAAGGGCTACTTAA 867 51.33 MAQTASRSKLRWGELDDDDGDLDFLLPPKKIIGPDENGLKKIIEYQFNEEGNKVKITTTTRTRKLAHARLSKHAIERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQGEGLDKTAAPEATAAAPGATKGAYVPPGMRAGADRTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48494923 48496939 + Maker00036638 Lcy5g2583 634398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2583 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 283 - -
Lcy5g2583 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lcy5g2583 288 Pfam RNA recognition motif 209 275 IPR000504 GO:0003723(InterPro)
Lcy5g2583 288 FunFam Eukaryotic translation initiation factor 3 subunit G 172 288 - -
Lcy5g2583 288 CDD eIF3G 37 156 IPR024675 -
Lcy5g2583 288 MobiDBLite consensus disorder prediction 168 206 - -
Lcy5g2583 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lcy5g2583 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676(InterPro)
Lcy5g2583 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Lcy5g2583 288 Pfam Eukaryotic translation initiation factor 3 subunit G 32 157 IPR024675 -
Lcy5g2583 288 SMART rrm1_1 208 281 IPR000504 GO:0003723(InterPro)
Lcy5g2583 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723(InterPro)
Lcy5g2583 288 Gene3D - 166 288 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0163 Lcy-Chr12:2048516 Lcy5g2583 Lcy-Chr5:48494923 1.18E-178 dispersed
Lcy13g1644 Lcy-Chr13:35403642 Lcy5g2583 Lcy-Chr5:48494923 4.05E-10 dispersed
Lcy4g0251 Lcy-Chr4:3078516 Lcy5g2583 Lcy-Chr5:48494923 2.50E-09 dispersed
Lcy5g2583 Lcy-Chr5:48494923 Lcy8g1408 Lcy-Chr8:40714533 1.83E-09 dispersed
Lcy5g2583 Lcy-Chr5:48494923 Lcy3g2258 Lcy-Chr3:49413285 1.90E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2583 K03248 - csv:101212619 540.806