Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2591 ATGGGAAATGGGCTTCCTCAGCCAATCTGCTTTAAATCCTCAGTTTCAGTTACACTTTTGAGTTTGTTTGAACCAACTATTGAATTAGAAAGAGAAAGAGAGAGAGAGATTAGGGGCGGAGCCGGAGGAATGGTGCCTAATGGATCAGGATCATCACCGCAGAGCGCAGACTTCGCTTTTTCAACCGCTGAGACACAAGACAACCATACCCGATGGAGTTTGGCAGTGGAGGCGGTGGCTCCGGTTGGGACAACGATTCCTCCTCCGACCCTCAACGCAGGAAAAAACGCTACCACCGTCACACTGCCAACCAGATTCAGAGGCTCGAGGCGTAAACCCTCTAATAAGACCCTCCCTTCCTCTCTTTTTATTTTCTTGCTTTGCCTTGACTCTGAAATGCATTACTGTTTGTTTGCTCAACATGAAAGGGCAGATAATAGTGCACTTCGGGCAGAGAACGACAAGATTCGATGTGAGAACATAGCCATCAGAGAGGCACTCAAAAATGTCATCTGCCCCTCCTGCGGTGGCCCTCCCCTTCAGGACCCCTACTTCGACGAGCACAAACTGCGAATCGAAAACGCCCATTTGAAAGAAGAGCTTGATAGAGTATCCAGCATTGCGGCCAAGTACATTGGGAGGCCAATCTCTCAACTTCCACCCATTCAGCCTTCTCATTTTTCCTCATTAGAATTATCCATGGGGAGTTTTCCCTCCCAAGAAATGGCTTGCCCTTCTCTTGATCTTGATTTACTTCCTGCAACTTCTTCTAGTGTTCCCAGTTTGCCATACCACCAACCAATTCACCTCTCCAACGTGGATAAGTCCCTCATGACTGAAATTGCCACAAATGCCATGGGAGAGCTGCTAAGGCTTTCTCAAGCTAATGAACCATTCTGGATGAAATCACCAAGTGACGGACGTGATGTTCTCGACCTCGAAACCTATGAACAGGCTTTTCCAAGAGCTAATACTCCCTTGAAGAATCTCCATTTTCGCACTGAAGCATCTAGAGATTCAGGCGTGGTGATCATGAATAGTGGAGCATTGGTTGACATGTTTATGGATTCTACCAAATGGACAGAGTTATTTCCCACAGTGGTCTCGATTGCAAGAACAATTGAAGTTATATCATCCGGAATGTTGGGAAGTCATAATGGCTCCTTGCAACTGATGTACCTAGAATTGCAGCTACCCTCCCCATTGGTTCCGACTCGCCACTTTTATGTCCTCAGATATTGTCAACAAATTGAGCAAGGCATGTGGGCTATAGTTGATGTTTCCTATAATATCCCCAGAGAAAACCAAGTAGTTTCTCATTCTCCGTGTCACCGCTTCCCCTCGGGCTGCTTGATCCAGGACATGCCTAATGGTTATTCCAAGGTTACTTGGATTGAGCATGTGGAAGTGGAAGATAAAGGCTCGACTCATTGGCTTTTTAGAGATCTTATTCATAGTGGATTAGCCTTTGGTGCTGAACGGTGGCTTGCAACTCTTCAGCGGATGTCTGAAAGGTTTGCCTGTTTAATGGTGACTGGTAGTTCCGGTCAGGATCTAGGCGGAGAGGGAAAGAGAAGCATGATGAAACTAGCACAGCGGATGGTGAGCAATTTCTGTGCTAGTATCAGCACATCTCATGGCCACCGTTGGACCACCCTTTCTGGGATGAATGAGGTTGGTGTTCGTGTCACAGTTCATAAAAGCGCGGATCCTGGCCAGCCTAATGGCGTGGTTCTTAGTGCAGCTACAACCATATGGCTCCCAGTTTCTCCTCAAACCATCTTTAACTTCTTTAAGAATGACAGAACCAGAGCTCAGTGGGATGTTCTCTCGGATGGCAATCCAGTTCAAGAGGTTGCTCATATAACCAACGGATCCCATCCAGGGAACTGCATATCTGTTCTCAGAGTGAGACTTGTGTTATTTTGTTGTACTTATTTTTCCCCACCCGAAGTTTTACTAGGAGGTTTAACGATGAAATCTACCAGCCATGAATGTTGCAATGAGTGGGGAGGACCCATCGAGTATTCCTTTACTACCCTCAGGATTTACAATTTTACCAGACGGGCGGCGGGACCAAGGAGAAGGCGCATCGAGCAGCTCGGACGTGCACAGCAGGTCAGGGGGCTCGCTCGTGACGGTGGCATTCCAGATACTAGTGAGCAGCTTGCCATCCGGGAAGCTGAATTTGGAGTCAGTGACAACGGTGAATAA 2214 47.29 MGNGLPQPICFKSSVSVTLLSLFEPTIELEREREREIRGGAGGMVPNGSGSSPQSADFAFSTAETQDNHTRWSLAVEAVAPVGTTIPPPTLNAGKNATTVTLPTRFRGSRRKPSNKTLPSSLFIFLLCLDSEMHYCLFAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENAHLKEELDRVSSIAAKYIGRPISQLPPIQPSHFSSLELSMGSFPSQEMACPSLDLDLLPATSSSVPSLPYHQPIHLSNVDKSLMTEIATNAMGELLRLSQANEPFWMKSPSDGRDVLDLETYEQAFPRANTPLKNLHFRTEASRDSGVVIMNSGALVDMFMDSTKWTELFPTVVSIARTIEVISSGMLGSHNGSLQLMYLELQLPSPLVPTRHFYVLRYCQQIEQGMWAIVDVSYNIPRENQVVSHSPCHRFPSGCLIQDMPNGYSKVTWIEHVEVEDKGSTHWLFRDLIHSGLAFGAERWLATLQRMSERFACLMVTGSSGQDLGGEGKRSMMKLAQRMVSNFCASISTSHGHRWTTLSGMNEVGVRVTVHKSADPGQPNGVVLSAATTIWLPVSPQTIFNFFKNDRTRAQWDVLSDGNPVQEVAHITNGSHPGNCISVLRVRLVLFCCTYFSPPEVLLGGLTMKSTSHECCNEWGGPIEYSFTTLRIYNFTRRAAGPRRRRIEQLGRAQQVRGLARDGGIPDTSEQLAIREAEFGVSDNGE 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48565640 48569217 + Maker00036075 Lcy5g2591 634406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2591 737 CDD START_ArGLABRA2_like 275 504 - -
Lcy5g2591 737 ProSiteProfiles START domain profile. 271 508 IPR002913 GO:0008289(InterPro)
Lcy5g2591 737 SUPERFAMILY Bet v1-like 522 637 - -
Lcy5g2591 737 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 139 637 IPR042160 -
Lcy5g2591 737 Gene3D - 281 505 IPR023393 -
Lcy5g2591 737 FunFam Homeobox-leucine zipper protein GLABRA 2 280 504 - -
Lcy5g2591 737 SMART START_1 280 505 IPR002913 GO:0008289(InterPro)
Lcy5g2591 737 Pfam START domain 281 504 IPR002913 GO:0008289(InterPro)
Lcy5g2591 737 SUPERFAMILY Bet v1-like 274 506 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2591 Lcy-Chr5:48565640 Lcy8g1446 Lcy-Chr8:41124241 4.52E-147 dispersed
Lcy5g2591 Lcy-Chr5:48565640 Lcy4g0564 Lcy-Chr4:6910018 4.19E-151 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2591 K09338 - csv:101215660 941.028