Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2593 ATGGTTTTGACGACAGTTGCAGACTCGGGTGATTCTGTGAACTGCACTTTTGGTTCCAGATATGTCCGCTCTCCTCCTCCCAAGTTCAAACTGGGGGAGAAATCTATTCCCAAGGATGCAGCGTACCAGATCATCCACGATGAGTTGATGCTGGACGGGACACCGAGGCTGAACTTGGCCTCTTTTGTTACTACGTGGATGGAGCCTGAGTGTGATAACCTCATCATGGCTTCTCTCAACAAGAACTATGTTGACATGGATGAGTACCCTGTCACCACTGAGCTCCAGAATCGATGTGTGAATATGATAGCTCGCCTGTTTCATGCCCCCATCGGAGAAGAAGAAGTTGCAGTTGGTGTGGGGACTGTGGGATCATCAGAGGCTATAATGCTGGCGGGCCTTGCTTTTAAGAGGAAATGGCAGCACAAAAGAAAATCTCAAGGCAAACCTTATGATAAGCCCAACATAGTCACTGGAGCTAATGTGCAGGTGTGCTGGGAGAAGTTTGCTAGGTACTTTGAGGTTGAGCTAAAGGAGGTGAAGCTTTCTGAAGGATTTTATGTCATGGATCCTGTGAAGGCTGTTGAACTCGTCGACGAGAATACCATTTGTGTTGCAGCAATTTTGGGATCCACTCTGACTGGAGAGTTTGAGGATGTAAAACTCCTTAATGAACTCCTCTGTAAGAAGAATAAGGAAACAGGTTGGGACACCCCAATTCATGTGGATGCAGCCAGTGGAGGGTTTATAGCGCCGTTCCTTTATCCCGATCTGGAGTGGGATTTTCGGTTGCCTTTGGTGAAGAGCATCAATGTGAGTGGCCACAAGTATGGCCTTGTTTACCCTGGTGTAGGATGGGTTGTTTGGAGGAGTAAAGAGGATCTTCCTGACGAGCTTGTGTTCCACATTAACTATCTTGGTTCTGATCAACCCACCTTCACTCTTAACTTCTCAAAAGGTTCTAGTCAAATCATCGCCCAGTATTATCAATTTATACGGCTTGGCTTCGAGGGATACAAAAACGTGATGGAGAACTGCAAGGAGAATGCGAGAGTGCTGAGAGAGGGAATAGAGAAGATGGGAAGGTTTGAGGTTGTTTCCAAGGATGTTGGAGTGCCCCTGGTGGCCTTCACTCTCAAAGATAGCAGCAAGCACACCGTGTTCGAGATATCAGAGAATCTGAGGAGGTTTGGATGGATCGTGCCAGCTTACACGATGCCACCGAATGCTCAGCACGTCGCGGTGCTGCGAGTGGTGATCAGGGAGGACTTCAGCCGGAGTTTGGCCGAGAGACTGATCTCGGACATCGAGAAAGTCCTAAAGGAAGTCGACTCACTGCCAATTCGGGTGGCTGTGAAAGCAGCAGAAGTGAAAGCTGGTGTTGAAGATGGTGGGAGAGTTACAAAGCATGTGAAGAAGAGTGATCGGGAGATTGAGGAGGAAATAACTGCATATTGGAGGAGGCTGGTAGATGGCAAGAAAACTGGTGCCTGCTAG 1497 48.16 MVLTTVADSGDSVNCTFGSRYVRSPPPKFKLGEKSIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTELQNRCVNMIARLFHAPIGEEEVAVGVGTVGSSEAIMLAGLAFKRKWQHKRKSQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGFYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLCKKNKETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCKENARVLREGIEKMGRFEVVSKDVGVPLVAFTLKDSSKHTVFEISENLRRFGWIVPAYTMPPNAQHVAVLRVVIREDFSRSLAERLISDIEKVLKEVDSLPIRVAVKAAEVKAGVEDGGRVTKHVKKSDREIEEEITAYWRRLVDGKKTGAC 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48579796 48582836 + Maker00036230 Lcy5g2593 634408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2593 498 Gene3D - 1 64 - -
Lcy5g2593 498 Gene3D - 65 359 IPR015421 -
Lcy5g2593 498 FunFam Glutamate decarboxylase 65 359 - -
Lcy5g2593 498 NCBIfam glutamate decarboxylase 16 443 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Lcy5g2593 498 Pfam Pyridoxal-dependent decarboxylase conserved domain 37 380 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Lcy5g2593 498 SUPERFAMILY PLP-dependent transferases 15 443 IPR015424 -
Lcy5g2593 498 FunFam Glutamate decarboxylase 360 447 - -
Lcy5g2593 498 Gene3D - 360 447 - -
Lcy5g2593 498 CDD DOPA_deC_like 58 438 - -
Lcy5g2593 498 PANTHER GLUTAMATE DECARBOXYLASE 1 494 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Lcy5g2593 498 FunFam Glutamate decarboxylase 5 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1572 Lcy-Chr10:40064805 Lcy5g2593 Lcy-Chr5:48579796 2.36E-275 dispersed
Lcy10g1573 Lcy-Chr10:40084878 Lcy5g2593 Lcy-Chr5:48579796 8.59E-276 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2593 K01580 - csv:101210903 937.562