Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2598 ATGATAGCCAATACTGCCTCGCCGACTCTTCCTTCTTCGGAACCTTATTCTTGCTTAGAAAATGGAAACAACAACAACAACAACAAGAGGAAGAGAAGGCCTGCCGGCACCCCAGATCCGGACGCAGAGGTGGTGTCTCTGTCCCCCAAAACACTGCTAGAATCGGACCGGTACGTGTGTGAGATCTGCAACCAGGGGTTCCAGCGGGACCAGAACCTACAGATGCACAGGCGGCGGCATAAGGTCCCTTGGAAGCTGCTCAAGAGGGAGACTCCTGTTGTGCGGAAGAGGGTTTTCGTTTGCCCTGAGCCCACCTGCCTGCACCACGACCCTTGCCACGCCCTCGGCGACCTCGTTGGCATCAAGAAGCACTTCCGAAGGAAGCACAGCAACCACAAGCAGTGGGTCTGTGAGAAATGCTCCAAGGGCTACGCCGTTCAGTCCGATTACAAGGCCCATCTCAAAACCTGTGGCACCCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCTAGGTACCTCACCTAA 528 55.87 MIANTASPTLPSSEPYSCLENGNNNNNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRYLT 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48629609 48632296 + Maker00036324 Lcy5g2598 634413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2598 175 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 134 158 - -
Lcy5g2598 175 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 172 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy5g2598 175 SMART c2h2final6 135 162 IPR013087 -
Lcy5g2598 175 SMART c2h2final6 58 80 IPR013087 -
Lcy5g2598 175 SMART c2h2final6 99 129 IPR013087 -
Lcy5g2598 175 MobiDBLite consensus disorder prediction 1 31 - -
Lcy5g2598 175 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 95 129 - -
Lcy5g2598 175 FunFam protein indeterminate-domain 12-like 37 105 - -
Lcy5g2598 175 MobiDBLite consensus disorder prediction 1 45 - -
Lcy5g2598 175 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Lcy5g2598 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Lcy5g2598 175 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Lcy5g2598 175 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lcy5g2598 175 Gene3D Classic Zinc Finger 43 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2358 Lcy-Chr5:46416795 Lcy5g2598 Lcy-Chr5:48629609 1.25E-97 dispersed
Lcy5g2598 Lcy-Chr5:48629609 Lcy9g1971 Lcy-Chr9:44649215 5.81E-68 dispersed
Lcy5g2598 Lcy-Chr5:48629609 Lcy1g0725 Lcy-Chr1:6207818 2.16E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20204 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2598 K25871 - rcu:8261817 343.584