Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2610 ATGTTTGAAACTTCCGCATCCATGAGAGAAAGAAAAATCCAATTTCTTGAAGGCCTTGGATTTGAGCGCTCTGATACCAACTTGATGCACTCAATTATTTGCTTCAAGCAGCTGACAGATTTTGGGCTTTCCAAGGTTGGTCTTATCAACAGTACTGATGATTTATCTGGACCTGCTGTTAGCGGGACAACTCTTCTCGGGTATGATGAGCCTACAATTTCTGCTTCAGAGCATCAACAAGAAAGACGAAAAAAGCGTTCTGCTGTTGGCACACCAGACTATTTGGCACCAGAGATACTATTGGGAACTGGACATGGTGCCACAGCTGACTGGTGGTCTGTTGGGATCATTTTATTTGAACTAATTGTTGGCATTCCACCCTTCAATGCCGAGCATCCCCAGGTTTCATTATTGCTCGAAAAGAAAGGAAGATTTGTTAAGATTACAGAGCAGCATGGTAGAAGTGTTTTTGAGCTTTCTATAGAAGAGACAGGTGCGGTTTGTATAGTTGATGCTTTTGAAGATTTACTCGTTTTTGTAGACCCAGAAGTTCTTCAGAAAAACAAAGTCTGA 573 41.71 MFETSASMRERKIQFLEGLGFERSDTNLMHSIICFKQLTDFGLSKVGLINSTDDLSGPAVSGTTLLGYDEPTISASEHQQERRKKRSAVGTPDYLAPEILLGTGHGATADWWSVGIILFELIVGIPPFNAEHPQVSLLLEKKGRFVKITEQHGRSVFELSIEETGAVCIVDAFEDLLVFVDPEVLQKNKV 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48793434 48795571 + Maker00036167 Lcy5g2610 634425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2610 190 ProSiteProfiles Protein kinase domain profile. 1 190 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2610 190 SMART serkin_6 2 180 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2610 190 Gene3D Transferase(Phosphotransferase) domain 1 26 171 - -
Lcy5g2610 190 SUPERFAMILY Protein kinase-like (PK-like) 36 143 IPR011009 -
Lcy5g2610 190 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 134 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lcy5g2610 190 Pfam Protein kinase domain 79 148 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2610 Lcy-Chr5:48793434 Lcy11g1911 Lcy-Chr11:42815816 3.39E-11 dispersed
Lcy5g2610 Lcy-Chr5:48793434 Lcy12g1309 Lcy-Chr12:28672732 1.61E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65995 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2610 K08789 - csv:101214945 202.601