Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g2610 | ATGTTTGAAACTTCCGCATCCATGAGAGAAAGAAAAATCCAATTTCTTGAAGGCCTTGGATTTGAGCGCTCTGATACCAACTTGATGCACTCAATTATTTGCTTCAAGCAGCTGACAGATTTTGGGCTTTCCAAGGTTGGTCTTATCAACAGTACTGATGATTTATCTGGACCTGCTGTTAGCGGGACAACTCTTCTCGGGTATGATGAGCCTACAATTTCTGCTTCAGAGCATCAACAAGAAAGACGAAAAAAGCGTTCTGCTGTTGGCACACCAGACTATTTGGCACCAGAGATACTATTGGGAACTGGACATGGTGCCACAGCTGACTGGTGGTCTGTTGGGATCATTTTATTTGAACTAATTGTTGGCATTCCACCCTTCAATGCCGAGCATCCCCAGGTTTCATTATTGCTCGAAAAGAAAGGAAGATTTGTTAAGATTACAGAGCAGCATGGTAGAAGTGTTTTTGAGCTTTCTATAGAAGAGACAGGTGCGGTTTGTATAGTTGATGCTTTTGAAGATTTACTCGTTTTTGTAGACCCAGAAGTTCTTCAGAAAAACAAAGTCTGA | 573 | 41.71 | MFETSASMRERKIQFLEGLGFERSDTNLMHSIICFKQLTDFGLSKVGLINSTDDLSGPAVSGTTLLGYDEPTISASEHQQERRKKRSAVGTPDYLAPEILLGTGHGATADWWSVGIILFELIVGIPPFNAEHPQVSLLLEKKGRFVKITEQHGRSVFELSIEETGAVCIVDAFEDLLVFVDPEVLQKNKV | 190 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 48793434 | 48795571 | + | Maker00036167 | Lcy5g2610 | 634425 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g2610 | 190 | ProSiteProfiles | Protein kinase domain profile. | 1 | 190 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g2610 | 190 | SMART | serkin_6 | 2 | 180 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g2610 | 190 | Gene3D | Transferase(Phosphotransferase) domain 1 | 26 | 171 | - | - | |
Lcy5g2610 | 190 | SUPERFAMILY | Protein kinase-like (PK-like) | 36 | 143 | IPR011009 | - | |
Lcy5g2610 | 190 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 37 | 134 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Lcy5g2610 | 190 | Pfam | Protein kinase domain | 79 | 148 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g2610 | Lcy-Chr5:48793434 | Lcy11g1911 | Lcy-Chr11:42815816 | 3.39E-11 | dispersed | |
Lcy5g2610 | Lcy-Chr5:48793434 | Lcy12g1309 | Lcy-Chr12:28672732 | 1.61E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65995 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g2610 | K08789 | - | csv:101214945 | 202.601 |