Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g2612 | ATGTATTCGTTCACTATCAGATTATTGACTGAAGATCCTCACCAGCGACTTGGAGCTATCGGCGCATCTGAGGTGAAGAGGCATATGTTCTTTAAAGATATTAACTGGGACACGCTTGCCCGACAAAAGGCTGCATTTGTTCCAACATCTGAAAGTGCTCTTGATACTAGTTATTTTACAAGTCGCTACTCATGGAATCATTCAGATGATCATGTCTATCCACCCAGTGAACTTGAGGATTCGAGTGATGCTGACAGCTTAAGTGGTAACAGTAGTTTGAGCAATCGTCAAGACGAAGTGGGAGATGAATGTGGGGGCCTTACAGATTTTGAGCCTGGTTCTTCTGTCAATTACTCATTCAGTAATTTCTCTTTCAAGAATCTCTCCCAGCTTGCATCCATCAACTATGACCTGCTTTCTAAGGGTTTCAAGGATGATCCTCCCAGTCATGATGCATAA | 459 | 42.7 | MYSFTIRLLTEDPHQRLGAIGASEVKRHMFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNHSDDHVYPPSELEDSSDADSLSGNSSLSNRQDEVGDECGGLTDFEPGSSVNYSFSNFSFKNLSQLASINYDLLSKGFKDDPPSHDA | 152 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 48808769 | 48811402 | + | Maker00036531 | Lcy5g2612 | 634427 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g2612 | 152 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 73 | IPR011009 | - | |
Lcy5g2612 | 152 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 32 | 135 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g2612 | 152 | MobiDBLite | consensus disorder prediction | 70 | 108 | - | - | |
Lcy5g2612 | 152 | Gene3D | Phosphorylase Kinase; domain 1 | 49 | 64 | - | - | |
Lcy5g2612 | 152 | Gene3D | Transferase(Phosphotransferase) domain 1 | 3 | 48 | - | - | |
Lcy5g2612 | 152 | MobiDBLite | consensus disorder prediction | 81 | 98 | - | - | |
Lcy5g2612 | 152 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 4 | 127 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g2612 | Lcy-Chr5:48808769 | Lcy4g2125 | Lcy-Chr4:47796637 | 7.28E-07 | dispersed | |
Lcy5g2612 | Lcy-Chr5:48808769 | Lcy12g1309 | Lcy-Chr12:28672732 | 3.44E-36 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g2612 | K08789 | - | csv:101214945 | 254.218 |