Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2612 ATGTATTCGTTCACTATCAGATTATTGACTGAAGATCCTCACCAGCGACTTGGAGCTATCGGCGCATCTGAGGTGAAGAGGCATATGTTCTTTAAAGATATTAACTGGGACACGCTTGCCCGACAAAAGGCTGCATTTGTTCCAACATCTGAAAGTGCTCTTGATACTAGTTATTTTACAAGTCGCTACTCATGGAATCATTCAGATGATCATGTCTATCCACCCAGTGAACTTGAGGATTCGAGTGATGCTGACAGCTTAAGTGGTAACAGTAGTTTGAGCAATCGTCAAGACGAAGTGGGAGATGAATGTGGGGGCCTTACAGATTTTGAGCCTGGTTCTTCTGTCAATTACTCATTCAGTAATTTCTCTTTCAAGAATCTCTCCCAGCTTGCATCCATCAACTATGACCTGCTTTCTAAGGGTTTCAAGGATGATCCTCCCAGTCATGATGCATAA 459 42.7 MYSFTIRLLTEDPHQRLGAIGASEVKRHMFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNHSDDHVYPPSELEDSSDADSLSGNSSLSNRQDEVGDECGGLTDFEPGSSVNYSFSNFSFKNLSQLASINYDLLSKGFKDDPPSHDA 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48808769 48811402 + Maker00036531 Lcy5g2612 634427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2612 152 SUPERFAMILY Protein kinase-like (PK-like) 2 73 IPR011009 -
Lcy5g2612 152 ProSiteProfiles AGC-kinase C-terminal domain profile. 32 135 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2612 152 MobiDBLite consensus disorder prediction 70 108 - -
Lcy5g2612 152 Gene3D Phosphorylase Kinase; domain 1 49 64 - -
Lcy5g2612 152 Gene3D Transferase(Phosphotransferase) domain 1 3 48 - -
Lcy5g2612 152 MobiDBLite consensus disorder prediction 81 98 - -
Lcy5g2612 152 PANTHER SERINE/THREONINE-PROTEIN KINASE 4 127 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2612 Lcy-Chr5:48808769 Lcy4g2125 Lcy-Chr4:47796637 7.28E-07 dispersed
Lcy5g2612 Lcy-Chr5:48808769 Lcy12g1309 Lcy-Chr12:28672732 3.44E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2612 K08789 - csv:101214945 254.218