Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2615 ATGAACGATTTGTTCTCCTCTCGCTCCTTCTCTCGCGACAGCCATGTCGTCGAGATGGGCAACGTCTCCTCCTCCCCTACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTCGAGTCCGTTAAAGACGAGCTCAAGGAGCTCGAGCGCCTCTACCAGAACCTCCATGACTCCCATGAGCAGAGCAAGACGCTTCACAATGCTAAGGCCGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTGCCCTTGCTCTCAAGAAGGCCAAGCTCATTAAGGTCCGGTTGGAGGCCCTTGATCGCTCCAATGCCGCCAATCGGAGCCTCCCCGGTTGCGGCCCCGGCTCCTCCTCTGACCGGACTCGGACTTCTGTAGTCAACGGGTTGAGGAAGAAATTGCAGGATTCCATGGAGAGCTTCAACAATCTCAGGCAGCAGATCTCCTCTGAGTACAGGGAGACTGTGCAGCGAAGATATTTCACTGTTACTGGTGAAAATCCGGACGAGAAGACCATTGATATCTTGATTTCTACAGGTGAAAGTGAGACCTTCTTGCAGAAAGCCATTCAAGAGCAAGGTAGAGGCAGAATCTTAGACACCATTAGGGAGATCCAGGAGAGGCATGATGCAGTAAAAGACCTGGAAAGGAACCTCAAGGAGCTGCACCAGGTTTTCTTGGACATGGCAGTCTTGGTGCACGAGCAAGGCGAGAAACTCGACGACATCGAGAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGAGGCACACAGGAGTTGTCGACAGCCAGAGTATACCAGAAAAACACCCGGAAATGGACGATTATTGGCATCATCATTTTGCTGCTCATTGTCCTGGTGATTGTCCTCAGCCTGCAGCCTTGGAAGAAGAACAATAGTACCACTACCACCCCCTAA 918 51.31 MNDLFSSRSFSRDSHVVEMGNVSSSPTAVNLDKFFEDVESVKDELKELERLYQNLHDSHEQSKTLHNAKAVKDLRSRMDSDVALALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTIREIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELSTARVYQKNTRKWTIIGIIILLLIVLVIVLSLQPWKKNNSTTTTP 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48884730 48887826 + Maker00040085 Lcy5g2615 634430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2615 305 PANTHER SYNTAXIN 33 280 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lcy5g2615 305 FunFam Syntaxin 132 194 293 - -
Lcy5g2615 305 Pfam Syntaxin 33 236 IPR006011 GO:0016020(InterPro)
Lcy5g2615 305 Gene3D - 29 161 - -
Lcy5g2615 305 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lcy5g2615 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Lcy5g2615 305 Gene3D - 197 293 - -
Lcy5g2615 305 CDD SynN 31 188 IPR006011 GO:0016020(InterPro)
Lcy5g2615 305 CDD SNARE_syntaxin1-like 200 260 - -
Lcy5g2615 305 SMART SynN_4 26 152 IPR006011 GO:0016020(InterPro)
Lcy5g2615 305 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lcy5g2615 305 Coils Coil 126 150 - -
Lcy5g2615 305 Pfam SNARE domain 237 289 IPR000727 -
Lcy5g2615 305 Coils Coil 31 65 - -
Lcy5g2615 305 Coils Coil 201 224 - -
Lcy5g2615 305 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
Lcy5g2615 305 SMART tSNARE_6 196 263 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1206 Lcy-Chr1:11408108 Lcy5g2615 Lcy-Chr5:48884730 1.05E-139 dispersed
Lcy5g1935 Lcy-Chr5:42182030 Lcy5g2615 Lcy-Chr5:48884730 1.05E-112 dispersed
Lcy5g2615 Lcy-Chr5:48884730 Lcy8g1448 Lcy-Chr8:41161245 1.36E-40 dispersed
Lcy5g2615 Lcy-Chr5:48884730 Lcy5g0507 Lcy-Chr5:5585492 9.63E-194 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2615 K08486 - csv:101208931 526.168