Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g2617 | ATGGCGACGTACCTTCATGGCAATTCTGAGTTCCAATCTTCTGATGGTGGCCTTCAAACCCTCGTCTTAATGAATCCCAGCTATGTCCAATTCTCCGATACTCCACCGCCTCCTCCTCCGTCGCATCCTAATCTCGTCTTCTTCAACTCTGCTGCGGCTGCTAATACCTTCACTACACAGAGTTTGGCTCACCCGCCTTCTCATACTCAACAATTTGTCGGCATCCCACTCCCGACGACGACCGCTTCTCCGACGTCCCAAGACCACAATTCGCATTCCTTGAGTGCCCACCATGATATCTCTGCCTTGCACGGCTTTGTTCCGCGTGTTCAGCATAACCTTTGGAACCCAATTGACCCATCCACGGCGGCGCGTGAGACTGCACGCGCTCAGCAGGGGTTGTCTTTGAGCTTGTCTTCACAGCATCCTCCTGGTTTTGGGTCTAGAGATGTTCAATCGCAGACCCAACAGGCGGTTTCCGGCGAGGAGAACGTGCGGATCTCCGGTGGATCGTCTTCTTCGGCTTCCGGTATAACCAATGGGGTGGCTGGAATTCAGGGCGTTTTAATCAGCTCCAAATATCTCAAGGCTGCTCAAGAACTTCTGGATGAGGTCGTCAATGTCACCCAAAACGGAATTAAAAACGAATCATCTCCGAAAAAGGCCACCGGAAATCAAACCAAGATGATCGGAGACGCTTCCGCCGCCACAGCAACCGCTGACGGTTCTTTGGAAGGAGAAGCCGACTGTAAACGCGCCGCAGAGCTGACAACCGCCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTCATAAGCATGCTCGATGAGGTACACAACAAGAAATCCAAAAAATCCCTTCATCGGAAATCCTCTGTTTCTTGCTCTGTTTTCAACTCTGTTCTTGATTTCTCTTCTTCTTTGTTCTCAATTTCTGTTCTGAATTTTGTTCTTCTTCTCAATTTTCAGGTGGAGCAGAGGTACAGACAGTACCACCACCAGATGCAGATAGTGATATCCTCATTCGAGCAGGCGGCCGGAGCTGGGTCAGCAAGAACCTACACGGCGCTCGCACTTCAGACGATCTCGAAGCAATTCCGATGCTTAAAAGACGCCATAACAGGCCAAATCAAAGCCGCAAACAAGAGTTTAGGAGAAGAAGAATGCATCGGAAGAAAAATGGAAGGTTCCCGGTTGAAATTCGTCGATAACCACCTCCGGCAACAGCGAGCTCTGCAACAATTGGGCATGATCCAACACAATGCTTGGAGACCCCAACGAGGCTTGCCGGAGAGATCCGTTTCGATTCTTCGCGCTTGGCTTTTCGAACACTTTCTCCACCCTTACCCTAAAGATTCAGACAAACACATGCTCGCTAAGCAAACAGGGCTCACAAGAAGCCAGGTTTCGAATTGGTTCATAAATGCGAGAGTTCGACTGTGGAAGCCAATGGTGGAGGAGATGTACATGGAGGAAATCAAGGAACAAGAACAGAACGGCGGCGGATCGGCACCGGCAACGGCGGCAGAGAAAAGCAACGACGATTCGAGTTCAAAATCCATAGCTGCACCACCGGAGACAAAAAGCCCGAATTCGAAACAAGAAAACTCCCCAAACCAAAACGTTCATCCTTCAATCTCAATCTCAACATCCTCCGGCGGAAATGTTCGAAACCCATCTGGATTTACCCTCATCGGAACGTCGTCGGAGCTCGACGGAATCACCCAAGGAAGCCCCAAGAAACAGAGAGGCTCCGACATCATCCATTCCTCAAACAACAACAACAACGCCCCTTTCATAAACATGGACATCAAACCCAGAGAAGAAGAACCACAACAAAATCAAAATCACCATCACCATCACCATCTTCCAATGAAATTCGACGAAGAGAGACAAAACAGAGATGGGTATTCATTTCTAGGCCAACCCCATTTCAACATCGGCGGATTCGGCCAATACCCAATCGGCGAAATCGCGAGATTCGACGCCGATCAGTTCACTCCAAGATTCTCCGGCAACAATGGCGTCTCTCTGACACTAGGCCTTCCCCATTGCGAAAATCTCTCTCTAAACGCAGCCACCCACCAATCCTTTCTCCCAAATCAGAGCATCCATTTAGGAAGAAGAACAGAAATCGGAAAACCCACTGATTTTTCCGCCATTAACGCCTCAACAGCTCACTCTTCCACTGCTTTCGAGACTATCAACATCCAAAATGGAAAAAGGTTTGCAGCTCAGTTACTGCCAGACTTTGTGGCCTAA | 2262 | 49.12 | MATYLHGNSEFQSSDGGLQTLVLMNPSYVQFSDTPPPPPPSHPNLVFFNSAAAANTFTTQSLAHPPSHTQQFVGIPLPTTTASPTSQDHNSHSLSAHHDISALHGFVPRVQHNLWNPIDPSTAARETARAQQGLSLSLSSQHPPGFGSRDVQSQTQQAVSGEENVRISGGSSSSASGITNGVAGIQGVLISSKYLKAAQELLDEVVNVTQNGIKNESSPKKATGNQTKMIGDASAATATADGSLEGEADCKRAAELTTAERQEIQMKKAKLISMLDEVHNKKSKKSLHRKSSVSCSVFNSVLDFSSSLFSISVLNFVLLLNFQVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQIKAANKSLGEEECIGRKMEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGGGSAPATAAEKSNDDSSSKSIAAPPETKSPNSKQENSPNQNVHPSISISTSSGGNVRNPSGFTLIGTSSELDGITQGSPKKQRGSDIIHSSNNNNNAPFINMDIKPREEEPQQNQNHHHHHHLPMKFDEERQNRDGYSFLGQPHFNIGGFGQYPIGEIARFDADQFTPRFSGNNGVSLTLGLPHCENLSLNAATHQSFLPNQSIHLGRRTEIGKPTDFSAINASTAHSSTAFETINIQNGKRFAAQLLPDFVA | 753 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 48927227 | 48929829 | + | Maker00005387 | Lcy5g2617 | 634432 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g2617 | 753 | ProSiteProfiles | 'Homeobox' domain profile. | 420 | 483 | IPR001356 | GO:0003677(InterPro) | |
Lcy5g2617 | 753 | SUPERFAMILY | Homeodomain-like | 424 | 490 | IPR009057 | - | |
Lcy5g2617 | 753 | MobiDBLite | consensus disorder prediction | 123 | 178 | - | - | |
Lcy5g2617 | 753 | FunFam | BEL1-like homeodomain protein 9 | 426 | 488 | - | - | |
Lcy5g2617 | 753 | MobiDBLite | consensus disorder prediction | 64 | 91 | - | - | |
Lcy5g2617 | 753 | MobiDBLite | consensus disorder prediction | 494 | 601 | - | - | |
Lcy5g2617 | 753 | Gene3D | - | 426 | 502 | - | - | |
Lcy5g2617 | 753 | SMART | HOX_1 | 423 | 487 | IPR001356 | GO:0003677(InterPro) | |
Lcy5g2617 | 753 | CDD | homeodomain | 423 | 484 | IPR001356 | GO:0003677(InterPro) | |
Lcy5g2617 | 753 | Pfam | Associated with HOX | 189 | 306 | IPR006563 | - | |
Lcy5g2617 | 753 | Pfam | Associated with HOX | 323 | 374 | IPR006563 | - | |
Lcy5g2617 | 753 | MobiDBLite | consensus disorder prediction | 500 | 600 | - | - | |
Lcy5g2617 | 753 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 125 | 530 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lcy5g2617 | 753 | Pfam | Homeobox KN domain | 440 | 479 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lcy5g2617 | 753 | MobiDBLite | consensus disorder prediction | 64 | 95 | - | - | |
Lcy5g2617 | 753 | SMART | prehox3 | 183 | 375 | IPR006563 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g2617 | Lcy-Chr5:48927227 | Lcy8g2020 | Lcy-Chr8:46432224 | 9.86E-175 | dispersed | |
Lcy8g0554 | Lcy-Chr8:18942712 | Lcy5g2617 | Lcy-Chr5:48927227 | 8.81E-56 | transposed | |
Lcy13g2179 | Lcy-Chr13:40728928 | Lcy5g2617 | Lcy-Chr5:48927227 | 2.81E-39 | transposed | |
Lcy5g0494 | Lcy-Chr5:5337893 | Lcy5g2617 | Lcy-Chr5:48927227 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20205 | None | None | None | None | Lcy | TF |
Pathway information
