Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2617 ATGGCGACGTACCTTCATGGCAATTCTGAGTTCCAATCTTCTGATGGTGGCCTTCAAACCCTCGTCTTAATGAATCCCAGCTATGTCCAATTCTCCGATACTCCACCGCCTCCTCCTCCGTCGCATCCTAATCTCGTCTTCTTCAACTCTGCTGCGGCTGCTAATACCTTCACTACACAGAGTTTGGCTCACCCGCCTTCTCATACTCAACAATTTGTCGGCATCCCACTCCCGACGACGACCGCTTCTCCGACGTCCCAAGACCACAATTCGCATTCCTTGAGTGCCCACCATGATATCTCTGCCTTGCACGGCTTTGTTCCGCGTGTTCAGCATAACCTTTGGAACCCAATTGACCCATCCACGGCGGCGCGTGAGACTGCACGCGCTCAGCAGGGGTTGTCTTTGAGCTTGTCTTCACAGCATCCTCCTGGTTTTGGGTCTAGAGATGTTCAATCGCAGACCCAACAGGCGGTTTCCGGCGAGGAGAACGTGCGGATCTCCGGTGGATCGTCTTCTTCGGCTTCCGGTATAACCAATGGGGTGGCTGGAATTCAGGGCGTTTTAATCAGCTCCAAATATCTCAAGGCTGCTCAAGAACTTCTGGATGAGGTCGTCAATGTCACCCAAAACGGAATTAAAAACGAATCATCTCCGAAAAAGGCCACCGGAAATCAAACCAAGATGATCGGAGACGCTTCCGCCGCCACAGCAACCGCTGACGGTTCTTTGGAAGGAGAAGCCGACTGTAAACGCGCCGCAGAGCTGACAACCGCCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTCATAAGCATGCTCGATGAGGTACACAACAAGAAATCCAAAAAATCCCTTCATCGGAAATCCTCTGTTTCTTGCTCTGTTTTCAACTCTGTTCTTGATTTCTCTTCTTCTTTGTTCTCAATTTCTGTTCTGAATTTTGTTCTTCTTCTCAATTTTCAGGTGGAGCAGAGGTACAGACAGTACCACCACCAGATGCAGATAGTGATATCCTCATTCGAGCAGGCGGCCGGAGCTGGGTCAGCAAGAACCTACACGGCGCTCGCACTTCAGACGATCTCGAAGCAATTCCGATGCTTAAAAGACGCCATAACAGGCCAAATCAAAGCCGCAAACAAGAGTTTAGGAGAAGAAGAATGCATCGGAAGAAAAATGGAAGGTTCCCGGTTGAAATTCGTCGATAACCACCTCCGGCAACAGCGAGCTCTGCAACAATTGGGCATGATCCAACACAATGCTTGGAGACCCCAACGAGGCTTGCCGGAGAGATCCGTTTCGATTCTTCGCGCTTGGCTTTTCGAACACTTTCTCCACCCTTACCCTAAAGATTCAGACAAACACATGCTCGCTAAGCAAACAGGGCTCACAAGAAGCCAGGTTTCGAATTGGTTCATAAATGCGAGAGTTCGACTGTGGAAGCCAATGGTGGAGGAGATGTACATGGAGGAAATCAAGGAACAAGAACAGAACGGCGGCGGATCGGCACCGGCAACGGCGGCAGAGAAAAGCAACGACGATTCGAGTTCAAAATCCATAGCTGCACCACCGGAGACAAAAAGCCCGAATTCGAAACAAGAAAACTCCCCAAACCAAAACGTTCATCCTTCAATCTCAATCTCAACATCCTCCGGCGGAAATGTTCGAAACCCATCTGGATTTACCCTCATCGGAACGTCGTCGGAGCTCGACGGAATCACCCAAGGAAGCCCCAAGAAACAGAGAGGCTCCGACATCATCCATTCCTCAAACAACAACAACAACGCCCCTTTCATAAACATGGACATCAAACCCAGAGAAGAAGAACCACAACAAAATCAAAATCACCATCACCATCACCATCTTCCAATGAAATTCGACGAAGAGAGACAAAACAGAGATGGGTATTCATTTCTAGGCCAACCCCATTTCAACATCGGCGGATTCGGCCAATACCCAATCGGCGAAATCGCGAGATTCGACGCCGATCAGTTCACTCCAAGATTCTCCGGCAACAATGGCGTCTCTCTGACACTAGGCCTTCCCCATTGCGAAAATCTCTCTCTAAACGCAGCCACCCACCAATCCTTTCTCCCAAATCAGAGCATCCATTTAGGAAGAAGAACAGAAATCGGAAAACCCACTGATTTTTCCGCCATTAACGCCTCAACAGCTCACTCTTCCACTGCTTTCGAGACTATCAACATCCAAAATGGAAAAAGGTTTGCAGCTCAGTTACTGCCAGACTTTGTGGCCTAA 2262 49.12 MATYLHGNSEFQSSDGGLQTLVLMNPSYVQFSDTPPPPPPSHPNLVFFNSAAAANTFTTQSLAHPPSHTQQFVGIPLPTTTASPTSQDHNSHSLSAHHDISALHGFVPRVQHNLWNPIDPSTAARETARAQQGLSLSLSSQHPPGFGSRDVQSQTQQAVSGEENVRISGGSSSSASGITNGVAGIQGVLISSKYLKAAQELLDEVVNVTQNGIKNESSPKKATGNQTKMIGDASAATATADGSLEGEADCKRAAELTTAERQEIQMKKAKLISMLDEVHNKKSKKSLHRKSSVSCSVFNSVLDFSSSLFSISVLNFVLLLNFQVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQIKAANKSLGEEECIGRKMEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGGGSAPATAAEKSNDDSSSKSIAAPPETKSPNSKQENSPNQNVHPSISISTSSGGNVRNPSGFTLIGTSSELDGITQGSPKKQRGSDIIHSSNNNNNAPFINMDIKPREEEPQQNQNHHHHHHLPMKFDEERQNRDGYSFLGQPHFNIGGFGQYPIGEIARFDADQFTPRFSGNNGVSLTLGLPHCENLSLNAATHQSFLPNQSIHLGRRTEIGKPTDFSAINASTAHSSTAFETINIQNGKRFAAQLLPDFVA 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48927227 48929829 + Maker00005387 Lcy5g2617 634432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2617 753 ProSiteProfiles 'Homeobox' domain profile. 420 483 IPR001356 GO:0003677(InterPro)
Lcy5g2617 753 SUPERFAMILY Homeodomain-like 424 490 IPR009057 -
Lcy5g2617 753 MobiDBLite consensus disorder prediction 123 178 - -
Lcy5g2617 753 FunFam BEL1-like homeodomain protein 9 426 488 - -
Lcy5g2617 753 MobiDBLite consensus disorder prediction 64 91 - -
Lcy5g2617 753 MobiDBLite consensus disorder prediction 494 601 - -
Lcy5g2617 753 Gene3D - 426 502 - -
Lcy5g2617 753 SMART HOX_1 423 487 IPR001356 GO:0003677(InterPro)
Lcy5g2617 753 CDD homeodomain 423 484 IPR001356 GO:0003677(InterPro)
Lcy5g2617 753 Pfam Associated with HOX 189 306 IPR006563 -
Lcy5g2617 753 Pfam Associated with HOX 323 374 IPR006563 -
Lcy5g2617 753 MobiDBLite consensus disorder prediction 500 600 - -
Lcy5g2617 753 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 125 530 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy5g2617 753 Pfam Homeobox KN domain 440 479 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy5g2617 753 MobiDBLite consensus disorder prediction 64 95 - -
Lcy5g2617 753 SMART prehox3 183 375 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2617 Lcy-Chr5:48927227 Lcy8g2020 Lcy-Chr8:46432224 9.86E-175 dispersed
Lcy8g0554 Lcy-Chr8:18942712 Lcy5g2617 Lcy-Chr5:48927227 8.81E-56 transposed
Lcy13g2179 Lcy-Chr13:40728928 Lcy5g2617 Lcy-Chr5:48927227 2.81E-39 transposed
Lcy5g0494 Lcy-Chr5:5337893 Lcy5g2617 Lcy-Chr5:48927227 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20205 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2617 - - - 0.0