Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2618 ATGGACGAAATCGAAGTCCCCCACTACTTCCTCTGCCCCATCTCCCTCGAGATCATGAAGGATCCCGTCACCCTCCCCTCCGGCATCACCTACGACCGCCACTCCATCGAAACCTGGCTCTTCTCCGACAACCACTCCTCCTGCCCTGTCACCAAGCTCCCCATCTCCCCCGACTCCGACTCCCTCACTCCCAACCACACCCTCCGCCGCTTGATCCAAGCCTGGTGCACTCTCCACTCCTCTCATGGAATCCAACGCTTCCCAACTCCCAAGCCCCCCGTCACCAAGCCCCAGATCCTCAAGCTCATCTCCTCCGCCTCCTCCTCCCCTGACTCCCACCTCTCCTGCATCCGCCGCCTCCGCTCCCTCGCCTCCGACTCCGAAGCCAATCGCCGCTCCCTCCAGTCCGCCGGCGCCCCCGAGTTTCTCGCCTCTCTCGTCGCCTCCTCTGACTCCGCCGTCTCCCACGAAGCCCTCTCCACTCTCCACAACCTCCGCCTCTCCGACTCCAACCTCAAGAGCCTCACCTCCAATGGGGACTTTTTCGATTCCTTGACCAGAGTCATGCAGCAGGGGACCTACGAGTCGAGGGCCTACGCGGTGCTCGTTCTGAAGTCCATGGTCGAAGTCGCCGATTCGGTCGAGCTGACGTTCTTGAAATCCGACTTGTTCGTGGAGATCGTCGGCGTTTTGAAGGACCAGACGACGTCCCCTCAGAGTTTGAAGGCGGCATTGAAGGTTCTGATCGTGGCCTGCCCGTGGGGGAGGAACAGAGTGAAGGCGGTCGAGGCCGGTGGGGTTGGGGCTTTGGTTGAGATCCTACTGGCGGCGGCCGCGGCGGAGAGGAGAGTGTGCGAGATGGCGTTGACGGCGGTGGATTTGCTGTGTGGGTGTGCGGATGGGCGGGCGGCGCTGCTGGGTCACGGCGGAGGGATGGCGGTGGTTTCAAAGAAGATTCTGAGAGTGTCGCAAGTGGGGAGTGAGCGGGCGGTTAGGATTCTGTTCTCGATCGCGAAGTATTCGGGGAGTCCGGCGGTTTTGGCGGAAATGGCGCAGGTGGGGATTGTGGCAAAGCTTTGCCTGGTTCTGCAAGTTGAGAGTGGGAGCAAGACGAAGGAGAAGGCTAAAGAGATTTTGAAGATGCACGCTCGTGTTTGGAGGAATTCGCCTTGCATTCCTTCCAAATTGGTTTCTTCTTATCCCGCAAATTAG 1212 60.15 MDEIEVPHYFLCPISLEIMKDPVTLPSGITYDRHSIETWLFSDNHSSCPVTKLPISPDSDSLTPNHTLRRLIQAWCTLHSSHGIQRFPTPKPPVTKPQILKLISSASSSPDSHLSCIRRLRSLASDSEANRRSLQSAGAPEFLASLVASSDSAVSHEALSTLHNLRLSDSNLKSLTSNGDFFDSLTRVMQQGTYESRAYAVLVLKSMVEVADSVELTFLKSDLFVEIVGVLKDQTTSPQSLKAALKVLIVACPWGRNRVKAVEAGGVGALVEILLAAAAAERRVCEMALTAVDLLCGCADGRAALLGHGGGMAVVSKKILRVSQVGSERAVRILFSIAKYSGSPAVLAEMAQVGIVAKLCLVLQVESGSKTKEKAKEILKMHARVWRNSPCIPSKLVSSYPAN 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49001279 49002490 + Maker00033079 Lcy5g2618 634433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2618 403 Gene3D - 93 390 IPR011989 -
Lcy5g2618 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Lcy5g2618 403 CDD RING-Ubox_PUB 7 58 IPR045210 -
Lcy5g2618 403 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy5g2618 403 SUPERFAMILY ARM repeat 98 369 IPR016024 -
Lcy5g2618 403 SUPERFAMILY RING/U-box 3 83 - -
Lcy5g2618 403 PANTHER WDSAM1 PROTEIN 3 399 IPR045185 GO:0061630(InterPro)
Lcy5g2618 403 SMART Ubox_2 9 75 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy5g2618 403 Pfam U-box domain 6 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2618 Lcy-Chr5:49001279 Lcy8g2021 Lcy-Chr8:46440291 5.47E-123 dispersed
Lcy12g2017 Lcy-Chr12:41562284 Lcy5g2618 Lcy-Chr5:49001279 8.08E-07 transposed
Lcy1g1656 Lcy-Chr1:17068656 Lcy5g2618 Lcy-Chr5:49001279 1.20E-151 transposed
Lcy5g0496 Lcy-Chr5:5412535 Lcy5g2618 Lcy-Chr5:49001279 4.74E-280 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2618 - - - 0.0