Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0020 ATGCTTTGTTCCGTACCGGCCGGGAAGCCTGCTCCCAACTGGCTCGACCGCCTGCGTTCTAACAAGGGTTTTCCGATCGCTGACAACCTTGACCTCGATCACTTTCTCTCTAACCAAAACCTAGATAATCCCTCCCCGTCCTCGCATCCCCATTCTAACCCCGATTCCACTCCGCCCAACCCCCACTCTGACTCTCACCCCAATTCTCTCCACCGGGACAACTCTGAAAATGGAAACCGAGGCTCCTACCGTATCATTTCCGGAATCCTCTCTGACCTCTTCAACATGGCTGGCGCCTCTCGAAATTCCAGATGTTCCGCCAAAAAGCTCCCCAGGAAACAGTCCAACCCCAGGATTTGCTCCATTCCTTCTGTTAGTAATGCCGACTATACGGATGAGAAGAGTCTGTGCTTTGCCCAAAAGGAAGATAACATCCTCTCATCAAACTCTGATAATAGCTCCAAAGGCGCCGCCAATGGTGGCTCGGATAAAGGACAGAATGCGCGGGGTAAGGTTGAAGAGGAAGAGGTGTTGGATGAGAAGGGCGACAAGGAACTTATAGGATACTCGAAGAGCGAGGTCACGGTCATCGATACTAGCTGCGATGTGTGGAAGTCCGACAAACTGATTTTCAGAAGGAAGAATGTATGGAAGGTCAAGGACAAGAAGGGTAAGTCGAGGAGCTATGGGAGGAAGAAGCGGAAGCAGTCTTCTGAAACGAATGACCTTCCCGATATGATTGCTTCGTCAAGTAAGAAAACCAAGGTCTGGGGTTCGGAGGAGCGCTTCCATTTCAATGCCCGACAAATCCGTGGAAAGGAATCTCTAAAACCATCTAACAAATTGTATGAAATGATAATGGAAGTGAATCTGGATTCAATACGCACTCTTTCTGCCTGTTGTGATGAGCAGAACTTCTGGAAATCATACATATTGTTTGAGTTCAAGAATGTGGATGGATATAATGCTCAGCATTGTTCTGTCCCAGAAATGAGTGCTAATGCACCGGATAGCAGTAATGACAAAAAGGACAATGCTTACACGATCTTACCGGAAAATGGCAGCTATGATCCTGACAAAAGTGCAAAGCAACGCCAGGTTATCTGCAAGCAGCAGCTCTCCAATATGAGTTCGTTTGCACATGGAAAGAGCAGCAGGACTACTATCTTCTTGGTTTTCATTTCCTTTTTCACAGCTCTGAATGATCTGTGTACATTACTCATTACTGCGGATGCCAAAAGCAATGTGTACATCGTTTATATGGGCAACAGACCACATGATAATGAAGAGCTGTTGGTAAAGACCCATCATGGAGTTCTTGCCTCTGTCCTTGGGAGCCAAGAAGCATCTGCGGATTCCCTGGTATATAACTATAAATATGGATTTTCTGGTTTTGCAGCAAAGCTTACCATGGCTCAAGCACAAATGATGTCAGAGTTGCCTTCAGTGATTAAAGTCATACCCAATCGTCTTCACAAGATGCAAACCACTAGGAGCTGGGACTACCTTCAACTCTCTCCACGATTTCCAAACTCTCTTCTACAGAAATCAAGAATGGGGAATGGGGCCATCATTGGCCTCCTTGATACAGGAATCTGGCCTGAATCTGAAGTTTTCTGTGATGACGGTCTGGGGCCTGTTCCCTCTAGGTGGAAGGGTATCTGCGAGTCAGGAGAGCTCTTCAATCCAGCAAAGGCTTGTAGCAGAAAACTAATAGGAGCCCGATATTTCATCAAGGGGCTGGAAGCTGCATATGGACATCCTTTCAATAATACTGGGTTCCAAGATTACCTGTCCCCGAGAGATTACTCAGGACATGGCACACACGTCTCTTCAGTTGCCGGTGGCTCCTTTGTACCCAATGTTGGTTACCATGGCCTAGCTGTTGGAACAGTAAGGGGTGGTGCGCCCCAGTCTCGGCTTGCTATGTATAAAGTCTGTTGGCGACTGAATGGAGGTGTATGCTCAGACATAGACATTCTCAAGGCCATCGACCAAGCGATATATGATGGCGTAGATGTGCTATCTCTGTCCCTTGGTCCTACCTTTCCTTCATATTCTGATGTTGACATGCACGATGGGATTGCAATTGGCGCATTTCATGCTGTAGCGAAGGGTATAGCTGTTGTTGGTGCAGCAGGAAATTCTGGTCCAGCAGCTTACTCTGTAGCTAATATAGAACCATGGTTGTTGACAGTCGCTGCAAGTTCTGTGGATCGTTCATTCTTAGTAGCCGTTACATTAGGAAACAACTGGACTACCATGGGACAAGGGATGTTCAGTGGAAAATTGACGAGGTTCCACAATCTAGTGTATCCTGAGGTCTCTGATCTTGATGATCCACGTGCCTGCGAATCTCTATCCTTAAATGATACATGGGCAGCTGGAAATGTAGTTCTGTGTTTCGCATCAGATGATTATGATGACAATACACACGATACATCTTGGTCCGTCAAAAAAGTTGGTGGGTTGGGGCTCATTGTTGCCAAGAATCCTACCAAGGCCGTCGAACCATTCATTAACAACTTCCCATGCGTTCAAATAAGCCTTGATGTTGGAATGCAGATACTCAACTATATTCGTTCTACCAGAAATCCTCAAGTCAAGATTGGTCCTTCAACGACACGTGTTGGTCAATCATCGTCCACCACCGTGGCCTACTTTTCATCTCGAGGACCTAATTCAGTTGCTCCAGCAATACTGAAGCCAGATATTGCGGCTCCAGGCGTTGCTATTCTAGCTGCTGTTCCTCCCTCTGACCCAAAGGAAAGAAATTCTTATGCTTTTATTTCTGGGACATCCATGGCAACTCCTCATGTATCAGCCATTGTTGCCCTTCTCAAATCATTGCACACTCATTGGTCTCCTGCTGCAATTAGGTCGGCCATTGTTACAACAGCCTGGACTTCGGATCCATATGGCGAAGTAATATTCGCAGAGGGACGTCCAATGAAATCTGCCGGTCCTTTTGATTTTGGAGGTGGAATTGTGAACCCCAATAAAGCACTGGACCCCGGTCTTGTATATGACATGGGAATGGCAGACTATATTAAGTATTTCTGTGCCATGGGCCACAACAATTCTGCCATTTCTGGGATTACCAAGAGGTCCATAACTTGCCCCAAAAGACGACCATCTATTTTGGACATAAACGTGCCATCCATAACAATTCCTAGCCTTAGACACTCTATAAACCTCACCAGAACTGTCATGAATGTGGGTTTGGTCAATTCAACATACAAGGCTGCCATTGTGCCCCCACCTGGCATAGCCATATCTGTAAAGCCTCGTATATTAAAATTCAACCACAAGATGAAGAGAATCTCCTTCACTGTTACTGTCTCTACTAATCACAGAGTGACAACTGGATACTGTTTCGGAAGCTTGACTTGGCTGGATGGAATTCATTCAGTTAGAATCCCAATATCTGTTAGAACTAACATTTGA 3447 46.04 MLCSVPAGKPAPNWLDRLRSNKGFPIADNLDLDHFLSNQNLDNPSPSSHPHSNPDSTPPNPHSDSHPNSLHRDNSENGNRGSYRIISGILSDLFNMAGASRNSRCSAKKLPRKQSNPRICSIPSVSNADYTDEKSLCFAQKEDNILSSNSDNSSKGAANGGSDKGQNARGKVEEEEVLDEKGDKELIGYSKSEVTVIDTSCDVWKSDKLIFRRKNVWKVKDKKGKSRSYGRKKRKQSSETNDLPDMIASSSKKTKVWGSEERFHFNARQIRGKESLKPSNKLYEMIMEVNLDSIRTLSACCDEQNFWKSYILFEFKNVDGYNAQHCSVPEMSANAPDSSNDKKDNAYTILPENGSYDPDKSAKQRQVICKQQLSNMSSFAHGKSSRTTIFLVFISFFTALNDLCTLLITADAKSNVYIVYMGNRPHDNEELLVKTHHGVLASVLGSQEASADSLVYNYKYGFSGFAAKLTMAQAQMMSELPSVIKVIPNRLHKMQTTRSWDYLQLSPRFPNSLLQKSRMGNGAIIGLLDTGIWPESEVFCDDGLGPVPSRWKGICESGELFNPAKACSRKLIGARYFIKGLEAAYGHPFNNTGFQDYLSPRDYSGHGTHVSSVAGGSFVPNVGYHGLAVGTVRGGAPQSRLAMYKVCWRLNGGVCSDIDILKAIDQAIYDGVDVLSLSLGPTFPSYSDVDMHDGIAIGAFHAVAKGIAVVGAAGNSGPAAYSVANIEPWLLTVAASSVDRSFLVAVTLGNNWTTMGQGMFSGKLTRFHNLVYPEVSDLDDPRACESLSLNDTWAAGNVVLCFASDDYDDNTHDTSWSVKKVGGLGLIVAKNPTKAVEPFINNFPCVQISLDVGMQILNYIRSTRNPQVKIGPSTTRVGQSSSTTVAYFSSRGPNSVAPAILKPDIAAPGVAILAAVPPSDPKERNSYAFISGTSMATPHVSAIVALLKSLHTHWSPAAIRSAIVTTAWTSDPYGEVIFAEGRPMKSAGPFDFGGGIVNPNKALDPGLVYDMGMADYIKYFCAMGHNNSAISGITKRSITCPKRRPSILDINVPSITIPSLRHSINLTRTVMNVGLVNSTYKAAIVPPPGIAISVKPRILKFNHKMKRISFTVTVSTNHRVTTGYCFGSLTWLDGIHSVRIPISVRTNI 1148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 268963 278160 + Maker00002375 Lcy6g0020 634464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0020 1148 SUPERFAMILY Subtilisin-like 494 1007 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0020 1148 ProSiteProfiles Serine proteases, subtilase domain profile. 499 1003 - -
Lcy6g0020 1148 ProSitePatterns Serine proteases, subtilase family, histidine active site. 606 616 IPR022398 -
Lcy6g0020 1148 MobiDBLite consensus disorder prediction 147 179 - -
Lcy6g0020 1148 Pfam Subtilase family 520 967 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy6g0020 1148 Pfam Peptidase inhibitor I9 416 491 IPR010259 -
Lcy6g0020 1148 PRINTS Subtilisin serine protease family (S8) signature 931 947 IPR015500 -
Lcy6g0020 1148 PRINTS Subtilisin serine protease family (S8) signature 520 539 IPR015500 -
Lcy6g0020 1148 PRINTS Subtilisin serine protease family (S8) signature 602 615 IPR015500 -
Lcy6g0020 1148 MobiDBLite consensus disorder prediction 36 50 - -
Lcy6g0020 1148 CDD Peptidases_S8_3 492 968 IPR034197 -
Lcy6g0020 1148 FunFam Subtilisin-like protease SBT1.5 522 749 - -
Lcy6g0020 1148 Gene3D - 739 877 - -
Lcy6g0020 1148 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 405 495 IPR037045 -
Lcy6g0020 1148 Gene3D Peptidase S8/S53 domain 523 1016 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g0020 1148 FunFam Subtilisin-like protease SBT1.5 1020 1147 - -
Lcy6g0020 1148 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 416 1142 IPR045051 -
Lcy6g0020 1148 CDD PA_subtilisin_like 746 870 - -
Lcy6g0020 1148 MobiDBLite consensus disorder prediction 147 161 - -
Lcy6g0020 1148 FunFam Subtilisin-like protease SBT5.3 406 495 - -
Lcy6g0020 1148 FunFam subtilisin-like protease SBT1.5 739 877 - -
Lcy6g0020 1148 Pfam Fibronectin type-III domain 1049 1144 IPR041469 -
Lcy6g0020 1148 MobiDBLite consensus disorder prediction 36 82 - -
Lcy6g0020 1148 Gene3D - 1020 1147 - -
Lcy6g0020 1148 MobiDBLite consensus disorder prediction 222 250 - -
Lcy6g0020 1148 ProSitePatterns Serine proteases, subtilase family, serine active site. 932 942 IPR023828 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0020 Lcy-Chr6:268963 Lcy6g0875 Lcy-Chr6:8888450 1.68E-260 dispersed
Lcy9g0819 Lcy-Chr9:27264730 Lcy6g0020 Lcy-Chr6:268963 6.25E-06 dispersed
Lcy6g0020 Lcy-Chr6:268963 Lcy9g0103 Lcy-Chr9:2228919 9.95E-257 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0020 - - - 0.0