Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g0024 | ATGGGATCGACCCAAGTGAGCGATGACGAGGAGGCGCAGCTGTTCGCGATGCAGTTGGCGAGCGCCTCGGTTGTTCCGATGGTGCTGAAGGCGGCGATTGAGCTGGACGTGCTGGAGATCATTGGCAGGGAGGGGGAAGGGGGTTTGCTGTCCCCCTCCCAAATCGCCTCTCAGCTCTCCGGGGCCAACAACCCAGAGGCCGACGTGGTCCTGGACCGCATGCTCCGCCTGCTGGCCAGCTACTCCATCCTCACCTGCTCCCTCAACACTCTCCCCGACGGCACGGTCCAGAGGCTCTACGGCCTCGCCCCTGTCTCCAAGTTCTTGATCAAGAATCAAGACGGCGTCTCCATTGCCCCACTCTGTCTCATGAATCAGGACAAGGTCCTCATGGAGAGCTGGTACCATTTGAAAGATGCAGTGCTTGAAGGTGGGATCCCATTCAACAGAGCATACGGAATGAGTGCGTTCGATTACCATGGAACAGATCCGAGATTCAACAAGGTTTTCAACAGGGGAATGTCCGACCATTCCACCATTACCATGAAGAAGATTCTGGAGACCTACAAAGGCTTCGAAGGCCTTAATTCTGTAGTGGATGTGGGCGGTGGGACTGGAGCTGTTCTCAACATGATAGTTTCCAAGTACCCTTCTATAAGGGGCATCAACTTCGACTTGCCCCATTGGATCTGTCACGACTGGAGCGACCAGCACTGTCTCAAGTTCTTAAACAACTGCTACCATGCGCTGCCGGAGCATGGCAAGGTGATCGTGGCCGAATGCATTCTTCCGGTAGCACCAGACACCAGCCTCGCCACCAAGGGAGTCATTCACATCGATGTCATAATGTTGGCTCACAACCCGGGAGGCAAAGAGAGGACCGAGAACGAGTTCCACGCCTTGGCTAAGGCTGCTGGATTTCAAGGTTTCAAGGTCCAGTGTTGTGCTTTCAACACCTACGTCATGGAATTTCTCAAGACACTTTAG | 987 | 54.51 | MGSTQVSDDEEAQLFAMQLASASVVPMVLKAAIELDVLEIIGREGEGGLLSPSQIASQLSGANNPEADVVLDRMLRLLASYSILTCSLNTLPDGTVQRLYGLAPVSKFLIKNQDGVSIAPLCLMNQDKVLMESWYHLKDAVLEGGIPFNRAYGMSAFDYHGTDPRFNKVFNRGMSDHSTITMKKILETYKGFEGLNSVVDVGGGTGAVLNMIVSKYPSIRGINFDLPHWICHDWSDQHCLKFLNNCYHALPEHGKVIVAECILPVAPDTSLATKGVIHIDVIMLAHNPGGKERTENEFHALAKAAGFQGFKVQCCAFNTYVMEFLKTL | 328 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 299599 | 301895 | - | Maker00002910 | Lcy6g0024 | 634468 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g0024 | 328 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 17 | 326 | IPR016461 | GO:0008168(InterPro) | |
Lcy6g0024 | 328 | Pfam | Dimerisation domain | 27 | 79 | IPR012967 | GO:0046983(InterPro) | |
Lcy6g0024 | 328 | SUPERFAMILY | Winged helix DNA-binding domain | 8 | 112 | IPR036390 | - | |
Lcy6g0024 | 328 | Gene3D | Vaccinia Virus protein VP39 | 110 | 228 | IPR029063 | - | |
Lcy6g0024 | 328 | PIRSF | O-mtase | 1 | 230 | IPR016461 | GO:0008168(InterPro) | |
Lcy6g0024 | 328 | PIRSF | O-mtase | 228 | 326 | IPR016461 | GO:0008168(InterPro) | |
Lcy6g0024 | 328 | FunFam | Caffeic acid 3-O-methyltransferase | 1 | 109 | - | - | |
Lcy6g0024 | 328 | Pfam | O-methyltransferase domain | 134 | 229 | IPR001077 | GO:0008171(InterPro) | |
Lcy6g0024 | 328 | Gene3D | - | 2 | 109 | IPR036388 | - | |
Lcy6g0024 | 328 | PANTHER | O-METHYLTRANSFERASE | 11 | 315 | IPR016461 | GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER) | |
Lcy6g0024 | 328 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 114 | 324 | IPR029063 | - | |
Lcy6g0024 | 328 | Gene3D | Vaccinia Virus protein VP39 | 229 | 326 | IPR029063 | - | |
Lcy6g0024 | 328 | FunFam | Os12g0199500 protein | 111 | 244 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy6g0024 | Lcy-Chr6:299599 | Lcy6g1847 | Lcy-Chr6:38476952 | 3.72E-109 | dispersed | |
Lcy6g0024 | Lcy-Chr6:299599 | Lcy6g1846 | Lcy-Chr6:38353647 | 4.93E-111 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy6g0024 | K13066 | - | csv:101204109 | 577.4 |