Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0024 ATGGGATCGACCCAAGTGAGCGATGACGAGGAGGCGCAGCTGTTCGCGATGCAGTTGGCGAGCGCCTCGGTTGTTCCGATGGTGCTGAAGGCGGCGATTGAGCTGGACGTGCTGGAGATCATTGGCAGGGAGGGGGAAGGGGGTTTGCTGTCCCCCTCCCAAATCGCCTCTCAGCTCTCCGGGGCCAACAACCCAGAGGCCGACGTGGTCCTGGACCGCATGCTCCGCCTGCTGGCCAGCTACTCCATCCTCACCTGCTCCCTCAACACTCTCCCCGACGGCACGGTCCAGAGGCTCTACGGCCTCGCCCCTGTCTCCAAGTTCTTGATCAAGAATCAAGACGGCGTCTCCATTGCCCCACTCTGTCTCATGAATCAGGACAAGGTCCTCATGGAGAGCTGGTACCATTTGAAAGATGCAGTGCTTGAAGGTGGGATCCCATTCAACAGAGCATACGGAATGAGTGCGTTCGATTACCATGGAACAGATCCGAGATTCAACAAGGTTTTCAACAGGGGAATGTCCGACCATTCCACCATTACCATGAAGAAGATTCTGGAGACCTACAAAGGCTTCGAAGGCCTTAATTCTGTAGTGGATGTGGGCGGTGGGACTGGAGCTGTTCTCAACATGATAGTTTCCAAGTACCCTTCTATAAGGGGCATCAACTTCGACTTGCCCCATTGGATCTGTCACGACTGGAGCGACCAGCACTGTCTCAAGTTCTTAAACAACTGCTACCATGCGCTGCCGGAGCATGGCAAGGTGATCGTGGCCGAATGCATTCTTCCGGTAGCACCAGACACCAGCCTCGCCACCAAGGGAGTCATTCACATCGATGTCATAATGTTGGCTCACAACCCGGGAGGCAAAGAGAGGACCGAGAACGAGTTCCACGCCTTGGCTAAGGCTGCTGGATTTCAAGGTTTCAAGGTCCAGTGTTGTGCTTTCAACACCTACGTCATGGAATTTCTCAAGACACTTTAG 987 54.51 MGSTQVSDDEEAQLFAMQLASASVVPMVLKAAIELDVLEIIGREGEGGLLSPSQIASQLSGANNPEADVVLDRMLRLLASYSILTCSLNTLPDGTVQRLYGLAPVSKFLIKNQDGVSIAPLCLMNQDKVLMESWYHLKDAVLEGGIPFNRAYGMSAFDYHGTDPRFNKVFNRGMSDHSTITMKKILETYKGFEGLNSVVDVGGGTGAVLNMIVSKYPSIRGINFDLPHWICHDWSDQHCLKFLNNCYHALPEHGKVIVAECILPVAPDTSLATKGVIHIDVIMLAHNPGGKERTENEFHALAKAAGFQGFKVQCCAFNTYVMEFLKTL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 299599 301895 - Maker00002910 Lcy6g0024 634468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0024 328 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 326 IPR016461 GO:0008168(InterPro)
Lcy6g0024 328 Pfam Dimerisation domain 27 79 IPR012967 GO:0046983(InterPro)
Lcy6g0024 328 SUPERFAMILY Winged helix DNA-binding domain 8 112 IPR036390 -
Lcy6g0024 328 Gene3D Vaccinia Virus protein VP39 110 228 IPR029063 -
Lcy6g0024 328 PIRSF O-mtase 1 230 IPR016461 GO:0008168(InterPro)
Lcy6g0024 328 PIRSF O-mtase 228 326 IPR016461 GO:0008168(InterPro)
Lcy6g0024 328 FunFam Caffeic acid 3-O-methyltransferase 1 109 - -
Lcy6g0024 328 Pfam O-methyltransferase domain 134 229 IPR001077 GO:0008171(InterPro)
Lcy6g0024 328 Gene3D - 2 109 IPR036388 -
Lcy6g0024 328 PANTHER O-METHYLTRANSFERASE 11 315 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
Lcy6g0024 328 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 324 IPR029063 -
Lcy6g0024 328 Gene3D Vaccinia Virus protein VP39 229 326 IPR029063 -
Lcy6g0024 328 FunFam Os12g0199500 protein 111 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0024 Lcy-Chr6:299599 Lcy6g1847 Lcy-Chr6:38476952 3.72E-109 dispersed
Lcy6g0024 Lcy-Chr6:299599 Lcy6g1846 Lcy-Chr6:38353647 4.93E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0024 K13066 - csv:101204109 577.4