Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0055 ATGGCTTTGCTGAGTCCTCGATTGCATAGATTCCGCCTAACCAAGCTCCACCATGCCTCTTCCTCCAAGCCCACTAAAACAAATCAGCTCACTGTCAGAAGAAAGAGCCGATGCTGCTCCGCCATAGCTATTGATGCTCCATCTTCTTTAGCAGATGCTGCGGGAATCAGATGGGGTTCGACTACTTTGCAAGGCTTGCGGGAAGAAATGGAGGACGATGCTGTTGTGCGCTCTGATGGTCTTAATGGCTTCTTGTTTGCTGCAGTATTCGATGGCCATGGTGGCTATTCTTCTGTCAAGTTCCTCAGGGAAGAGCTGTACAAAGACTGCGTAGCAGCTTTACAAGGTGGGCTGCTGTTGAATGGAGGGAATTTTGAAGTGATAAAAGCGGCTTTGGAGAAGGCTTTTGATGATACTGATAAAAGATTGCTCCTTTTGCTTGAGGCAGCTGGGGAGGAAGATGAATCTGGTTCCACTGCAACTGCGGCATTCATACGAAATGATGTTATGTTCATTTCACATGTTGGTGACTCTTGTGTTGTCTTGTCACGTTCCGGAGGAGCACAGGTGTTGACTAGTTCTCATCGGCCTTATGGAAACAACAGCACCTCATTGCAAGAGATTAGAAGAATTAGAGAAGCAGGTGGATGGATTGTTAATGGGAGAATCTGTGGAGACATCTCTGTATCTCGTGCATTTGGTGACATACGATTCAAGACAAAGAAATACGAGTTCGGCAGTTTGACCATAGATATTTTTCTCATCAGTGTACAGTTCAATGGAGATTTGGTTACTGCATCACCAGAAATTTTTCAAGTTACTCTTGGATCAAATATCGAGTTTATACTGATTGCATCTGATGGCTTATGGGATTACATGAATAGACTGTTCATCAACTTTGATCAAGACAGACTAAATACGTGCCATTTTGGGTATTATTTCAGCTCTGATGCGGTTAAGTTTGTTCGGGATCAACTTAGACAGCACGGTGATGTTCAGCTAGCTTGTGAAGCCCTCGCGCAAGCAGCCTTGGATAAAGGGTCACAAGACAATATCAGCGTTATCATGGCTGATTTGGGGCGGACAGATTGGCGGAATTTGCCCCTTAAGCAAGACAATGTCATATTGGAACTGGCTCAAGCTTGTGCTACGATTGGGATTGTTTCTTTTGGTATTTGGTGGGCGTCCTCTATTTTCTCTCTTTAA 1206 44.53 MALLSPRLHRFRLTKLHHASSSKPTKTNQLTVRRKSRCCSAIAIDAPSSLADAAGIRWGSTTLQGLREEMEDDAVVRSDGLNGFLFAAVFDGHGGYSSVKFLREELYKDCVAALQGGLLLNGGNFEVIKAALEKAFDDTDKRLLLLLEAAGEEDESGSTATAAFIRNDVMFISHVGDSCVVLSRSGGAQVLTSSHRPYGNNSTSLQEIRRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKYEFGSLTIDIFLISVQFNGDLVTASPEIFQVTLGSNIEFILIASDGLWDYMNRLFINFDQDRLNTCHFGYYFSSDAVKFVRDQLRQHGDVQLACEALAQAALDKGSQDNISVIMADLGRTDWRNLPLKQDNVILELAQACATIGIVSFGIWWASSIFSL 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 544538 549883 - Maker00002552 Lcy6g0055 634499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0055 401 ProSiteProfiles PPM-type phosphatase domain profile. 57 359 IPR001932 -
Lcy6g0055 401 Pfam Protein phosphatase 2C 59 294 IPR001932 -
Lcy6g0055 401 Gene3D - 56 365 IPR036457 -
Lcy6g0055 401 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169(InterPro)
Lcy6g0055 401 SUPERFAMILY PP2C-like 55 360 IPR036457 -
Lcy6g0055 401 CDD PP2Cc 56 359 IPR001932 -
Lcy6g0055 401 PANTHER PROTEIN PHOSPHATASE 2C 49 358 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lcy6g0055 401 SMART PP2C_4 47 357 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0055 Lcy-Chr6:544538 Lcy9g2338 Lcy-Chr9:47748218 2.38E-17 dispersed
Lcy6g0055 Lcy-Chr6:544538 Lcy13g0137 Lcy-Chr13:1323540 3.51E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0055 K04457 - csv:101218076 625.935