Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0069 ATGGATTTAGACAGTATCGAGTGTGTGTCATCGTCAGATGGTCTCGATGAGGATGAGATCCATCTGCACCACACTCTTCATCCTTATTCCCATTCTCATCATCACCCAGAGTTGTCAGCGTCGAAGCCTCGCAATGGAAACAACAATAGCGCTGTGAACGGCCCCACTGCAACTGCGCCGGCAACTAGCGTCCATGAATTGCTGGAGTGCCCTGTCTGCACTAATTCTATGTATCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGCTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTTGAATTGCCTTGCAAGTATTATTCCTTGGGGTGCCCTGAGATATTTCCATACTACAGTAAACTTAAGCATGAGGCTTTGTGCAACTTCAGACCCTATAGTTGCCCCTACGCTGGGTCGGAATGCTCTGCTGTTGGGGATATTCCTTTCCTTGTTGCCCATCTGAGGGACGATCATAAGGTGGACATGCACACTGGCTGCACGTTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTCGGTCAATACTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTACATGGCTTTCCTTCGATTCATGGGTGATGAGAATGAGGCTCGAACCTACAGCTACAGTCTCGAGGTTGGTGGATATGGGCGGAAACTGATATGGGAGGGTACACCACGAAGTATTAGAGATAGTCATCGAAAAGTCAGGGACAGCCACGATGGATTGATCATTCAGAGAAATATGGCTCTTTTCTTCTCTGGTGGGGATAGAAAGGAACTGAAGCTGAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGGGTCTGCATACCGAACCTTTGTAGCTAA 996 47.39 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSASKPRNGNNNSAVNGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 617257 620367 + Maker00002875 Lcy6g0069 634513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0069 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270(InterPro)
Lcy6g0069 331 CDD RING-HC_SIAHs 68 106 - -
Lcy6g0069 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 311 IPR008974 GO:0005515(InterPro)
Lcy6g0069 331 CDD Sina 184 312 - -
Lcy6g0069 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 41 313 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Lcy6g0069 331 FunFam E3 ubiquitin-protein ligase SINAT3 11 121 - -
Lcy6g0069 331 Pfam Sina, zinc finger 119 194 - -
Lcy6g0069 331 MobiDBLite consensus disorder prediction 28 58 - -
Lcy6g0069 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 122 IPR013083 -
Lcy6g0069 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Lcy6g0069 331 Pfam Sina, TRAF-like domain 214 311 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Lcy6g0069 331 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 70 105 IPR049548 -
Lcy6g0069 331 SUPERFAMILY TRAF domain-like 123 315 - -
Lcy6g0069 331 FunFam E3 ubiquitin-protein ligase SINAT5-like 179 311 - -
Lcy6g0069 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 176 IPR013083 -
Lcy6g0069 331 FunFam E3 ubiquitin-protein ligase SINAT3 122 178 - -
Lcy6g0069 331 SUPERFAMILY RING/U-box 59 110 - -
Lcy6g0069 331 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0256 Lcy-Chr12:3142887 Lcy6g0069 Lcy-Chr6:617257 1.19E-26 dispersed
Lcy4g0830 Lcy-Chr4:10772557 Lcy6g0069 Lcy-Chr6:617257 3.29E-160 dispersed
Lcy6g0069 Lcy-Chr6:617257 Lcy7g0691 Lcy-Chr7:6398544 9.85E-155 dispersed
Lcy6g0068 Lcy-Chr6:613316 Lcy6g0069 Lcy-Chr6:617257 1.78E-259 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0069 K04506 - csv:105434867 677.552