Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0072 ATGGGCTACGGCAGGCTCAACGAAACCGACCCCGGCGGCACCTCCGGTGCCGTCACCTTCCAACTCTCCGACGACGCCGTTTCCTCTCCCTCTCCCAACCGGAGGCGAAGGCGACTTCTCCTTCTCTCCCTAATGTCCCTCATTCTCATCGTCGCCGCCGCCGTCTCCGCCACCTTCCTCGTCGGCCTCCGAACCGCCTCCCGGGCCCGATCCGACCCGAACCTCCCTCGAAAACCGACTCAGGCCATTTCCAGGGCCTGTAGCCGAACTCGCTTCCCGACTCTCTGTGTCAACTCGCTCCTCGATTTCCCTGGATCTCTCAACGCCAACGAGCAGGATCTCGTCCACATTTCCTTCAATTTGACTCTCCACCATCTCAACAGAGCGCTCTATTTGTCCTCTGAGATCTCCTCTCTTCAAATGGATCTTCGCGTCCGCTCCGCCTACGACGCTTGCCTCGAACTCCTCGACGACTCTGTCGACGCTCTCACTCGCTCCTTGCAGTCCGTCGCCCCGCCTTCCTCCGACGCCGGCCCGCAGCGACTCGGCTCCTCCGAGGACGTCATCACCTGGCTCAGTGCCGCCCTCACCAATCAAGATACCTGTACGGATGGATTCTCTGAACTCAGCGGGAGTGTGAAAGATCAAATGACGGATAAACTCCACAATTTGTCGGAGCTTGTGAGCAATTGCTTGGCGCTGTTTTCCGGTAGCGAAACGAGCGATTTCTCCGGAGTGCCGATTCAGAACAAGCGACGGTTGATGAACGCCGGCGAGAAGGAGGATAGTTCCGGTGACTTCCCCGGCTGGATGAGTCGGCGGGAGAGGAGGCTGCTGACGCTGCCGGTGGGAGCGCTGCAGGCCGATATTGTGGTCTCGAAGGACGGGAACGGAACGGTGAAGACGATCGCCGAAGCGATCAAAAAGGCGCCGGAATACAGTAGCAAAAGGACGATCATCTACGTGATGGCAGGAAGGTACGAAGAGAAGAATCTCAAGGTAGGGAGGAAGAAAACGAACCTGATGTTTGTTGGAGATGGCAAGGGCAAAACTGTCATTTCCGGTGCTAAGAGCGTCTTCGACAACGTGACAACTTTTCACACGGCGTCGTTTGCGGCCACCGGCGCCGGTATAATCTTGAGGGACGTGACATTTGAGAATTGGGCTGGACCAGGGCGGCACCAGGCGGTGGCGCTCCGAGTGGGAGCGGACCACGCCGTCGTGTACCGGTGCAACATAATCGGGTATCAGGACACTCTGTACGTCCATTCGAACCGCCAATTCTACCGAGAGTGCGACATTTACGGCACCGTGGATTTCATCTTCGGCAATGCGGCGGTGGTGTTTCAGAACTGCAGCATCTACGCCCGAAAGGCCATGGACCTTCAAAAGAACACGATCACGGCCCAAAACCGGAAGGATCCGAATCAGAACACCGGAATTTCCATCCATGCTTGCCGGATTCTGGCCGCCTCCGATCTGGCCTCGTCCAACAGCAGCAACCCGACTTATCTGGGGCGTCCGTGGAAATTATACTCTAGAGTCGTTTACATGCTATCGTACATCGGTGGCCACGTGCACCCACGCGGTTGGCTGGAGTGGAACGCCACGTTTGCACTTGACACGTTGTATTACGGTGAGTATATGAATTCCGGGCCAGGTGGGGCTGTGGGGCAGAGGGTGACGTGGCCCGGGTATCGGGTCATAACGTCCACGGTGGAGGCGAGTAAGTTCACGGTGGCGCAGTTCATTTACGGCTCGTCGTGGTTGCCGTCCACCGGAGTCGCATTCCTCGGAGGGCTAAATGTGTAA 1812 57.67 MGYGRLNETDPGGTSGAVTFQLSDDAVSSPSPNRRRRRLLLLSLMSLILIVAAAVSATFLVGLRTASRARSDPNLPRKPTQAISRACSRTRFPTLCVNSLLDFPGSLNANEQDLVHISFNLTLHHLNRALYLSSEISSLQMDLRVRSAYDACLELLDDSVDALTRSLQSVAPPSSDAGPQRLGSSEDVITWLSAALTNQDTCTDGFSELSGSVKDQMTDKLHNLSELVSNCLALFSGSETSDFSGVPIQNKRRLMNAGEKEDSSGDFPGWMSRRERRLLTLPVGALQADIVVSKDGNGTVKTIAEAIKKAPEYSSKRTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGAKSVFDNVTTFHTASFAATGAGIILRDVTFENWAGPGRHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSIYARKAMDLQKNTITAQNRKDPNQNTGISIHACRILAASDLASSNSSNPTYLGRPWKLYSRVVYMLSYIGGHVHPRGWLEWNATFALDTLYYGEYMNSGPGGAVGQRVTWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 645012 648403 - Maker00002840 Lcy6g0072 634516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0072 603 SMART PMEI_2 78 234 IPR006501 GO:0004857(InterPro)
Lcy6g0072 603 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 237 IPR035513 -
Lcy6g0072 603 ProSitePatterns Pectinesterase signature 2. 434 443 IPR033131 -
Lcy6g0072 603 Pfam Pectinesterase 289 586 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy6g0072 603 Gene3D - 283 601 IPR012334 -
Lcy6g0072 603 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 236 IPR035513 -
Lcy6g0072 603 FunFam Pectinesterase 79 238 - -
Lcy6g0072 603 Pfam Plant invertase/pectin methylesterase inhibitor 82 234 IPR006501 GO:0004857(InterPro)
Lcy6g0072 603 NCBIfam pectinesterase inhibitor domain 57 235 IPR006501 GO:0004857(InterPro)
Lcy6g0072 603 SUPERFAMILY Pectin lyase-like 285 599 IPR011050 -
Lcy6g0072 603 CDD PMEI-like_3 86 236 - -
Lcy6g0072 603 FunFam Pectinesterase 283 601 - -
Lcy6g0072 603 PANTHER PECTINESTERASE 42 592 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0072 Lcy-Chr6:645012 Lcy6g2382 Lcy-Chr6:48596680 1.95E-143 dispersed
Lcy12g0133 Lcy-Chr12:1659503 Lcy6g0072 Lcy-Chr6:645012 3.64E-261 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0072 - - - 0.0