Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0076 ATGTCGTCTACGTTGCTAGAGGTGACCCGCTCGTCGCACGAGGAGGTGGAGCGACTCGAGCGGCTTATAGTGAAGGAGCTCCAGAATGAACCTGCTTCCGGCAAGGACCGTTTGTTACAGAGTCACCGAGTCCGCAACATGATTGATACCATCATGTCGACCACCGAAAAACTCGTACTCTCTTCTTTATACTCTTTCTCTGATTTCTGTGTGCCGATGTTGAAAATTTGGGTTGAGATATATGAAGATAAGGATAGTGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACATCGGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGGGAGAGGCTGCAATTGATGATGTTTTGGCTATTGATACTGCCGAGAAAAAGTTACCACATGAAAATTTTTGTTTGCGTATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAATGAGGATGAGGGTCTACTGAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGTTGGTTTCGTTATGGGGTTGGCAGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGAATACACCTCTTCAATTGTTGGACAAAAAACACTTCGCGAAACTGTCTCGGCAACCGATTCAGAATGGGGCAGCTGTAGCTTCACTAAACAATGAAAATTTGAAACAAGTTGCCCTGTTGGAAGCAAAAGTTGAAAAATTGTGCGATCTTCTGGATGAGACAATTGCCCGAACCAAAGACAACATTGTTAAGAAGCAAGCCTTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACACAAGCTGAGTCTGAAAGTGATGATGAAGAGCAGCAGATCTATAATCCGCTCAAGCTCCCAATGGGTTGGGATGGGAAACCTATACCTTACTGGCTCTACAAGCTTCATGGCCTCGGTCAGGAATTTAAATGTGAGATATGTGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCAAATACAAAGAATTTTAATGAAATCACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATTCAAGAACGACAAGGAGTTAACAAGTGGCGACCAGATCTGGAAGAAGAATACGAAGATAAGGAGGGTAACATTTACAATAAGAAGACATATACAGATCTGCAACGCCAGGGGTTGATATAA 1272 43.79 MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVLSSLYSFSDFCVPMLKIWVEIYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEGEAAIDDVLAIDTAEKKLPHENFCLRIREYHRRHPAARVVDVNEDEGLLKEEPQIEFSGEVGFVMGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKHFAKLSRQPIQNGAAVASLNNENLKQVALLEAKVEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 709558 718075 - Maker00002385 Lcy6g0076 634520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0076 423 Pfam Replication stress response SDE2 C-terminal 182 218 IPR025086 -
Lcy6g0076 423 PANTHER SPLICING FACTOR SF3A-RELATED 1 153 IPR051421 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005681(PANTHER)
Lcy6g0076 423 Pfam SF3a60/Prp9 C-terminal 304 423 IPR024598 GO:0000398(InterPro)|GO:0003723(InterPro)|GO:0005681(InterPro)
Lcy6g0076 423 ProSiteProfiles Zinc finger matrin-type profile. 328 359 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
Lcy6g0076 423 Coils Coil 267 294 - -
Lcy6g0076 423 MobiDBLite consensus disorder prediction 277 296 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0076 K12827 - csv:101205916 459.529