Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0081 ATGTGCGATCTCACTACTATGATTAAGACGAAGAATACTCGCCGAAGACGGCTGAGAGTTCGTAAGCTGAGGTACAAATGGCAGAGGAAGGTACACGAGGCGGAAGGTGAGGGCAACGAGTTGAGCGAAAATGGAGTTTCGGAGTCGAATGGTGATCGAGTAGTACTCTCTGAGAAGGAATCGATTTCGGCGTTTGATTGCGGATTGTACAGTGAGATGTCGATTATAGGGCGGAGGAAGGAGATGGAAGACGAAGTGAGAGTGGAATTGGGATTGACGACGGCTATTAATGATGCGAAGTACGATTTCTTCGCAGTGTACGACGGACACGGTGGGGCTCAAGTGGCGCAGGTGTGCCGTGAGCGGTTGCACCGGATTGTGGCGGAGGAGATTGGGGATCGGGGAGAGATGGATGAGGCGGAGTGGGGGAGGTTGATGGAGAGGTGCTTTGAGAGAATGGACAAAGAAGTGAACAGCGGCGCCGCCGTGATGAAGACGGTCGGCTCGGCGGTGGTGGCGGCCTTGATCGGAAAGGAGGAGGTGGTGGTGGCCAATTGCGGCGATTGTCGAGCCGTTTTGGCCAGGGATGGAATTGCCTTGCCCTTGTCTAACGATCATAAGCCTGGCAGAGCTGATGAGTTGAAGAGAATTGAATCTGCCGGTGGGAGGGTCATAAACTGGAATGGCTACCGGGTGCTAGGAGTTCTTGCCACTTCGAGATCGATCGGTGATGAATATCTTAAACCATTTGTTATCTCCAAACCAGAAGTTACTGTGACCAAGCGAACCAACAACGACGAGTTCCTCATACTTGGAAGCGATGGTCTGTGGGACGTCGTATCGAACGATATTGCCTGCAACATAGTGAGGAGATGTTTTGGAGGCAAAATGAAGAGGATTTCACTAAAGGTGGCAAACGACAGCCATGTTGCTGAAGCTGCAGCAGTGTTGGCAGAGCTCGCGGTGGCTCGTGGAAGCAAGGACAACATCAGTGTGATAGTAGTAGATTTGAGGAAACCAAACAGTTCCTCTCCATGA 1038 51.64 MCDLTTMIKTKNTRRRRLRVRKLRYKWQRKVHEAEGEGNELSENGVSESNGDRVVLSEKESISAFDCGLYSEMSIIGRRKEMEDEVRVELGLTTAINDAKYDFFAVYDGHGGAQVAQVCRERLHRIVAEEIGDRGEMDEAEWGRLMERCFERMDKEVNSGAAVMKTVGSAVVAALIGKEEVVVANCGDCRAVLARDGIALPLSNDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTNNDEFLILGSDGLWDVVSNDIACNIVRRCFGGKMKRISLKVANDSHVAEAAAVLAELAVARGSKDNISVIVVDLRKPNSSSP 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 773112 775599 + Maker00002618 Lcy6g0081 634525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0081 345 Pfam Protein phosphatase 2C 72 330 IPR001932 -
Lcy6g0081 345 Gene3D - 65 343 IPR036457 -
Lcy6g0081 345 PANTHER PROTEIN PHOSPHATASE 43 336 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy6g0081 345 ProSitePatterns PPM-type phosphatase domain signature. 103 111 IPR000222 GO:0043169(InterPro)
Lcy6g0081 345 SUPERFAMILY PP2C-like 67 339 IPR036457 -
Lcy6g0081 345 SMART PP2C_4 56 335 IPR001932 -
Lcy6g0081 345 ProSiteProfiles PPM-type phosphatase domain profile. 69 337 IPR001932 -
Lcy6g0081 345 FunFam Protein phosphatase 2C 50 75 344 - -
Lcy6g0081 345 CDD PP2Cc 70 337 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2240 Lcy-Chr10:46200009 Lcy6g0081 Lcy-Chr6:773112 2.02E-69 dispersed
Lcy11g0153 Lcy-Chr11:1691780 Lcy6g0081 Lcy-Chr6:773112 5.32E-84 dispersed
Lcy12g0891 Lcy-Chr12:12724307 Lcy6g0081 Lcy-Chr6:773112 1.66E-37 dispersed
Lcy13g0137 Lcy-Chr13:1323540 Lcy6g0081 Lcy-Chr6:773112 1.34E-72 dispersed
Lcy13g2197 Lcy-Chr13:40895327 Lcy6g0081 Lcy-Chr6:773112 2.20E-71 dispersed
Lcy2g0859 Lcy-Chr2:7827168 Lcy6g0081 Lcy-Chr6:773112 7.82E-55 dispersed
Lcy6g0081 Lcy-Chr6:773112 Lcy6g0218 Lcy-Chr6:1986861 8.32E-44 dispersed
Lcy6g0081 Lcy-Chr6:773112 Lcy6g0090 Lcy-Chr6:846158 9.35E-38 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0081 K14497 - csv:101214188 556.984