Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0090 ATGGTATGCAGCTACAATATAAGGAATGTGATTGCTCAGGCTGGACATGTAGGAATAATCAGCAGAAGGGTTCAAATCAACAATATCTGGAGGAGTTTGCCTTCCAATTTTGGATTTGTTCACACTTGGAAGCGTGAGTATAGAACGAATCTCATGATGATGGTCGATACCGGTGCATCGGAAAATCGCGGTCCAGTTGTTGATAAGCATCCAGAGAAAGATGAAGATGGTGGCTATGCCAGTGGAGGGTGGAAAAGTGACGATGGGAAACTTAGTTGGGGGTATTCAAGTTTCAGAGGGAAGAGGGCAACCATGGAAGATTTCTTTGATATTAAAATGTCGAAGGTTAATGGTCAAACGGTCTGCCTGTTTGGCATCTTTGATGGTCACGGTGGATCCCGTGCTGCAGAGTTTCTGAAGAATCATCTCTTTGAAAACCTCATGAAGCACCCAAAATTTTTTATGGATACCAAATTAGCTATCAGTGAAACGTATCAACAGACCGATGCTGAATTTTTAAATTCGGAAAAAGATACTTTAAGGGACGATGGCTCTACTGCTTCAACAGCTTTGCTAGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCGCGCACTATAATCTCAAAGGCGGGTGAAGCAATCCCTCTTTCTGAGGACCACAAACCAAATAGAACTGACGAGCGGAGGAGAATTGAAAATGCTGGGGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTGTTAGCAATGTCCCGTGCTTTCGGTAACAAGATGTTGAAACAGTTTGTCGTGGCAGATCCCGAGATTCAGGATCTCGAAGTAGACAAGGACATCGAGCTGCTCGTTCTCGCAAGCGATGGAGTTTGGGACGTGGTACCCAACGAGGATGCAGTGTTAGTTGCAGGGAAGGAAGAAGACCCCGAGGCAGCAGCTCGGAAGCTAACCGAAGCAGCGTTTACCCGGGGTAGCGCTGACAATATAACATGCATCGTGGTGAAGTTCCATCACGAAAATGCAGGTCCTGCTACCGATACTCGAGAAAACAACTGA 1062 46.05 MVCSYNIRNVIAQAGHVGIISRRVQINNIWRSLPSNFGFVHTWKREYRTNLMMMVDTGASENRGPVVDKHPEKDEDGGYASGGWKSDDGKLSWGYSSFRGKRATMEDFFDIKMSKVNGQTVCLFGIFDGHGGSRAAEFLKNHLFENLMKHPKFFMDTKLAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRTIISKAGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPEIQDLEVDKDIELLVLASDGVWDVVPNEDAVLVAGKEEDPEAAARKLTEAAFTRGSADNITCIVVKFHHENAGPATDTRENN 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 846158 851124 + Maker00002414 Lcy6g0090 634534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0090 353 Gene3D - 84 343 IPR036457 -
Lcy6g0090 353 SMART PP2C_SIG_2 104 338 IPR001932 -
Lcy6g0090 353 ProSiteProfiles PPM-type phosphatase domain profile. 92 338 IPR001932 -
Lcy6g0090 353 SMART PP2C_4 82 336 IPR001932 -
Lcy6g0090 353 PANTHER PROTEIN PHOSPHATASE 76 337 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy6g0090 353 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169(InterPro)
Lcy6g0090 353 CDD PP2Cc 94 338 IPR001932 -
Lcy6g0090 353 MobiDBLite consensus disorder prediction 62 83 - -
Lcy6g0090 353 SUPERFAMILY PP2C-like 90 339 IPR036457 -
Lcy6g0090 353 MobiDBLite consensus disorder prediction 63 81 - -
Lcy6g0090 353 Pfam Protein phosphatase 2C 96 331 IPR001932 -
Lcy6g0090 353 FunFam Probable protein phosphatase 2C 76 84 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0412 Lcy-Chr2:3436845 Lcy6g0090 Lcy-Chr6:846158 6.79E-12 dispersed
Lcy4g0673 Lcy-Chr4:8138087 Lcy6g0090 Lcy-Chr6:846158 8.90E-56 dispersed
Lcy5g0825 Lcy-Chr5:13058564 Lcy6g0090 Lcy-Chr6:846158 8.48E-33 dispersed
Lcy6g0090 Lcy-Chr6:846158 Lcy9g1917 Lcy-Chr9:44161374 3.73E-97 dispersed
Lcy6g0081 Lcy-Chr6:773112 Lcy6g0090 Lcy-Chr6:846158 9.35E-38 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0090 K17506 - csv:101203681 672.544