Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0095 ATGGTTGATAGTTTAGCTGAATTTTTCCAACAAAATGAAGAATTTGTCGACAATCCAAGTCCCCATTTGGAAGGGGATGACCTCTTCAGCATCTTCGAGAGTTTGGAGAGTGTCGCGGAGTTCACCATGATCGAGGACGACGTCGAGCCTGCCAAAGATGGCGAGGACACCACTAGCTTGGTCTTCTCCGAGACCGAGCTCGAGACCTCGCCAAAAAGCAAGAGATTGAAGACGACGGCGGCGGGACTTTCTTCCTATGAGGAACCAAACCCTGATGGACCTCAAAGAATGTCTCACATTACGGTGGAGCGCAACCGTAGGAAGCAAATGAACGAGCACTTGTCCGTCTTGAGGTCCCTCATGCCTTGCTTCTATGTCAAGAAAGGAGATCAAGCTTCAATAATTGGAGGGGTGGTGGAATACATCAAAGAGTTGCAACAAGTTCTTCAATCACTAGAGGCCAAAAAGCAAAGGAAAGTTTATAGTGAAGTGCTGAGCCCTAGGGTAGTTTCAAGTCCAAGGCCTTTACCAATGAGTCCAAGAAAGCCACCACTAAGCCCTCGCCTTAACTTGCCAATTAGTCCAAGAACCCCACAACCCTCTAGCCCTTACAGCAAGCCTCCAAGGTTGCAACAACCTCCCACCGCTGTGGCTGCCGCCGCCGTGCCCGTTGCCGGTGCCTATAACATCTCTTCAAGCAGCAGCTGCACCAACAACAACAACTCATTAGAGCCATCGCCTTGTAATTCATCTTCAACCACAAATTCCTCCATTGACAACAATAACAATGCTAACAATGATCTTGTGGCGAATTCAAAATCAGCCATAGCTGAAGTTGAAGTGAAGTTTACAGGTCCAAATGTGGTTTTGAAGACAGTTTCTCCACCAATTCCTGGACAAGCTGTGAAGATCATTTCTGCACTTGAACAACTCTCCCTTGAAATTCTCCATGTCAAGATCACCACTGTTGATGAAACCATGTTTAACTCTTTTACAATTAAGGTATATTCAACAACAAAGTCACTAGCTTTTTCACTAGTTTAA 1044 45.98 MVDSLAEFFQQNEEFVDNPSPHLEGDDLFSIFESLESVAEFTMIEDDVEPAKDGEDTTSLVFSETELETSPKSKRLKTTAAGLSSYEEPNPDGPQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKKQRKVYSEVLSPRVVSSPRPLPMSPRKPPLSPRLNLPISPRTPQPSSPYSKPPRLQQPPTAVAAAAVPVAGAYNISSSSSCTNNNNSLEPSPCNSSSTTNSSIDNNNNANNDLVANSKSAIAEVEVKFTGPNVVLKTVSPPIPGQAVKIISALEQLSLEILHVKITTVDETMFNSFTIKVYSTTKSLAFSLV 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 886988 888220 - Maker00002396 Lcy6g0095 634539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0095 347 SMART finulus 100 151 IPR011598 GO:0046983(InterPro)
Lcy6g0095 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 169 IPR036638 GO:0046983(InterPro)
Lcy6g0095 347 CDD bHLH_AtFAMA_like 97 170 - -
Lcy6g0095 347 FunFam Transcription factor SPEECHLESS 86 160 - -
Lcy6g0095 347 Coils Coil 138 158 - -
Lcy6g0095 347 MobiDBLite consensus disorder prediction 64 97 - -
Lcy6g0095 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 145 IPR011598 GO:0046983(InterPro)
Lcy6g0095 347 PANTHER TRANSCRIPTION FACTOR FAMA 12 341 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Lcy6g0095 347 Gene3D - 88 159 IPR036638 GO:0046983(InterPro)
Lcy6g0095 347 MobiDBLite consensus disorder prediction 233 265 - -
Lcy6g0095 347 MobiDBLite consensus disorder prediction 173 210 - -
Lcy6g0095 347 MobiDBLite consensus disorder prediction 160 216 - -
Lcy6g0095 347 Pfam Helix-loop-helix DNA-binding domain 95 146 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0095 Lcy-Chr6:886988 Lcy6g1062 Lcy-Chr6:11624684 4.75E-20 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20214 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0095 K20558 - csv:101211617 461.84