Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0102 ATGGCCCTCGCCGTGCTCGACGCCCTCGACAACGCTCGGACCCAATGGTACCATATCACGGCCATAGTGATCGCCGGGATGGGCTTCTTCACCGACGCCTACGATCTTTTCTGCATCTCGACCGTGTCGAAGCTTCTCGGCCGACTTTATTACTTCGATCCCGATAGTACGAAGCCCGGAAAACTTCCCAACGCAGTTAACAACGCGGTGATCGGAGTTGCGCTGGTCGGAACCCTATCGGGGCAGCTTTTCTTTGGGTGGTTGGGTGACAAACTTGGGAGGAAGAAAGTTTATGGTGTTACCCTAATTCTGATGGCCTTTTGTGCCATTTGCTCAGGGCTGTCTTTTGGGTCAACATCGAAATCAGTGATTGGTACACTTTGCTTCTTTAGATTTTGGCTTGGATTTGGCATTGGCGGCGATTATCCACTTTCAGCCACCATCATGTCTGAATATGCTAACAAAAAGACTCGAGGGGCTTTCATTGCAGCTGTCTTCGCCATGCAGGGTGTGGGGTTGGTTTTTGCAGGGCTAGTGTCAATGATCCTATCAAAAATCTTCCTCACCCTTCACGATGCTCCCTCCTACAAAAGCAACCACGTATTCTCCACACAACCTCAAGGAGACTTCCTATGGCGGATCGTCTTGATGCTTGGTGCTTTGCCAGCCATCTTGACTTACTATTGGCGCATGAAAATGCCTGAAACTGGCCGCTACACTGCCCTCATCGAAGGCAACGCCAAGCAAGCCGCTGCCGACATGGGAAAGGTCTTGGAGATCTCAATCCAAGCTGACCAAGACAAGCTTTCCCATTTCAAATCTGTCAACGAATATGGCTTGCTCTCCAAAGAGTTCTTCCACCGCCACGGCCTCCACTTGATCGGCACCACCACCACTTGGTTCTTGCTCGACATTGCCTTCTACAGCAATAACCTCACTCAAAAGGACATCTTCCCGGCCATGAACTTGACCAAGAAAGCCGAAGAGGTCAATGCTTTGGAGGAAGTTTACGAGACATCCAAGGCCATGTTTCTCGTTGCCCTTCTTGGGACCTTCCCTGGCTATTGGTTCACCGTCTTCCTCATTGAGAAGCTTGGGAGGTTCAAAATCCAGCTCATTGGATTCTTCATGATGTCCGTTTTCATGGCGGTCCTCGGCGTTCGCTACAACTATTTGAAGCATCATCCGGCGGAGTTCGCCGTGCTTTATGGCCTGACGTTCTTCTTCGCCAACTTCGGTCCGAATAGCACCACTTTTGTTCTTCCGGCCGAGCTCTTCCCGACTAGGGTTCGCTCGACGTGCCATGCGCTGAGTGCCGCGTCGGGGAAGGCCGGTGCGATCGTTGGAGCTTTTGGGGTGCAAAACTATACGCTGGATGGCGACCCTAGCAAGATTCAAAAGGCCATGATTTTCTTGGCCTTCACCAACATGCTAGGGTTTGTGTTTACGTTCTTGGTGACGGAGACGAAAGGCCGGTCGTTGGAGGAGATCTCCGGTGAGGACGGTGGCGGCGGTGGAGAAAATGAAACTCAAATGCCAGTGAGAACCATGGGAAAGCCAGGAGCTCAAATGGAAGGTGAAATTTGA 1587 51.48 MALAVLDALDNARTQWYHITAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYFDPDSTKPGKLPNAVNNAVIGVALVGTLSGQLFFGWLGDKLGRKKVYGVTLILMAFCAICSGLSFGSTSKSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGLVFAGLVSMILSKIFLTLHDAPSYKSNHVFSTQPQGDFLWRIVLMLGALPAILTYYWRMKMPETGRYTALIEGNAKQAAADMGKVLEISIQADQDKLSHFKSVNEYGLLSKEFFHRHGLHLIGTTTTWFLLDIAFYSNNLTQKDIFPAMNLTKKAEEVNALEEVYETSKAMFLVALLGTFPGYWFTVFLIEKLGRFKIQLIGFFMMSVFMAVLGVRYNYLKHHPAEFAVLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAASGKAGAIVGAFGVQNYTLDGDPSKIQKAMIFLAFTNMLGFVFTFLVTETKGRSLEEISGEDGGGGGENETQMPVRTMGKPGAQMEGEI 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 948176 951167 + Maker00002827 Lcy6g0102 634546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0102 528 Pfam Sugar (and other) transporter 23 498 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy6g0102 528 MobiDBLite consensus disorder prediction 495 528 - -
Lcy6g0102 528 FunFam Inorganic phosphate transporter 1-6 17 510 - -
Lcy6g0102 528 SUPERFAMILY MFS general substrate transporter 9 498 IPR036259 -
Lcy6g0102 528 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 6 496 - -
Lcy6g0102 528 CDD MFS_PhT 22 490 - -
Lcy6g0102 528 ProSiteProfiles Major facilitator superfamily (MFS) profile. 21 491 IPR020846 GO:0022857(InterPro)
Lcy6g0102 528 Gene3D MFS general substrate transporter like domains 17 514 IPR036259 -
Lcy6g0102 528 NCBIfam phosphate:H+ symporter 6 500 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2119 Lcy-Chr12:42485577 Lcy6g0102 Lcy-Chr6:948176 2.01E-222 dispersed
Lcy6g0102 Lcy-Chr6:948176 Lcy9g2351 Lcy-Chr9:47815231 5.44E-153 dispersed
Lcy6g0102 Lcy-Chr6:948176 Lcy13g0374 Lcy-Chr13:4260426 3.73E-231 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0102 K08176 - csv:101210631 935.25