Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0106 ATGATGAAGAATAGCTTCATCTTCCTTGAAATTTTGTTGTTTTTAGCGATCATCTTACCAGGGGCTCTCACTGAGCCAGTTGAAGACAAGCAAGCTCTGCTTGATTTCTTCCATAATATCCCCCACTCGCCCTCTCTCAATTGGAATGAGAGTAGTTCAGTGTGCAAAGCCTGGACAGGAGTGTTTTGCAACTCTGATGAGTCTAGAGTTGTAGCCCTTCGATTACCCGGGACTGGTCTGCGCGGTTCGATCCCCATGAATACTCTTAGTCGCTTATCTGCGCTCGAGATCCTAAGCCTTAGGTTAAATAGGATATCAGGACCTTTCCCTTCTGATTTTTCCAAGCTAGAAAACTTGAGTTCCTTATATCTGCAATACAACAACTTTTCTGGTCCTTTGCCTTTAGATTTTTCGGTTTGGAATAACCTTAGTATCATTGATCTATCGAACAATTTCTTTAATGGGAGTATTCCTTCTTCTATCTCAAAGTTGAGTCATTTGACTGTTCTGAATCTTGCAAACAATTCGTTTTCAGGCGAAATTCCGGACCTTAATATTCCAAGTCTGCAACGGTTAGATTTGTCCAATAATAGTCTTACAGGAAATGTGCCTCATTCTCTTCAAAGATTTCCAAGTTGGGTGTTCTCTGGTAACAATGTTACCGTAGAACATGGTGCAATTCCCCCATCTTTTCCGCTTCAGCCTCCCAGTGCTCAACCCACAAGAAAAGGAAAAGGACTAAGTGAATCTGCAACACTGGGTTTTATAATAAGTGGTTCTGTTGTAGGGTTTATTTTGCTAGCTGTTTTGTTGATTGCTTGCTGGTTGAACAAGGGAAAAGAAAATGTGAGTTCCACCATGGAGCCCAAAAAGAAGGAAGCATCTGTGAAGAAAAGGGGTTTTGAGAGCCAAGAACAAAAGAACAACCTTAATTTCTTTCAGGATTCTAATCTTGCATTCGACTTGGAAGACCTGTTGAGAGCCTCCGCTGAAGTTCTCGGGAAAGGAACCTTTGGAGTGAGCTACAAGGCGGCTTTGGAGGATTCGACGACTGTGGTGGTGAAGAGGCTGAATCAAGTGACTGTTGGAAAGCGAGAATTTGAACAGCAGATGCAGTTGATTGGAAACATTAAGCACGAGAATGTTGTTTCCTTGAGAGCATACTATTATTCAAAGGATGAAAAGCTTATGGTCTATGACTACTATGGACAAGGGAGTGTGTCTGCAATGTTACACAGTAAAGAAGGAGATGGTTTACCTGTATTAGATTGGGATACTCGGATGAAAATTGCTATCGGAGCGGCTCGAGGTCTTGCTCATATTCACACAGAAAATGGTGTAAAATGCTCCCATGGAAACGTCAGAGCCTCAAACATTTTCCTCAACTCTAAAGGATATGGATGTGTATCCGATGTTGGTTTAGCCGTGTTGATGAATTCAATTCCACTACCAGCCACCAGAACTCCTGGTTACCGAGCCCCTGAAGTGACCGACACTCGGAGAGCATCAGAAGCAGCCGATGTCTACAGTTTCGGGGTGGTGTTGCTGGAGCTTCTGACTGGAAAATCCCCCATACATGTTGAAGGTTGTAATGAAGTTGTGAATTTGGTGAGGTGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTTTTTGATGTGCAGCTTCTCAGGTATCCAGATATAGAAGAAGAAATGGTGGAGATGCTGCAAATTGGTTTGTCTTGTGTTGCCAAAATGCCCGAGCAGAGGCCAAAAATGATCGATATAGCGTCGAGAATCGAGCAGGTTCGGCAACTGAGTACAGGAACCCGACCATCGTTTGGGTCAAAATCAGCGCATTCGACTCCAGTTCATGTAATGGAAATTGGTTCTTCCTCATATCCACATTGA 1896 43.41 MMKNSFIFLEILLFLAIILPGALTEPVEDKQALLDFFHNIPHSPSLNWNESSSVCKAWTGVFCNSDESRVVALRLPGTGLRGSIPMNTLSRLSALEILSLRLNRISGPFPSDFSKLENLSSLYLQYNNFSGPLPLDFSVWNNLSIIDLSNNFFNGSIPSSISKLSHLTVLNLANNSFSGEIPDLNIPSLQRLDLSNNSLTGNVPHSLQRFPSWVFSGNNVTVEHGAIPPSFPLQPPSAQPTRKGKGLSESATLGFIISGSVVGFILLAVLLIACWLNKGKENVSSTMEPKKKEASVKKRGFESQEQKNNLNFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSTTVVVKRLNQVTVGKREFEQQMQLIGNIKHENVVSLRAYYYSKDEKLMVYDYYGQGSVSAMLHSKEGDGLPVLDWDTRMKIAIGAARGLAHIHTENGVKCSHGNVRASNIFLNSKGYGCVSDVGLAVLMNSIPLPATRTPGYRAPEVTDTRRASEAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVRWVNSVVREEWTAEVFDVQLLRYPDIEEEMVEMLQIGLSCVAKMPEQRPKMIDIASRIEQVRQLSTGTRPSFGSKSAHSTPVHVMEIGSSSYPH 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 993662 997059 - Maker00002748 Lcy6g0106 634550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0106 631 Gene3D Ribonuclease Inhibitor 26 236 IPR032675 -
Lcy6g0106 631 Pfam Protein tyrosine and serine/threonine kinase 331 594 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g0106 631 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Lcy6g0106 631 SUPERFAMILY L domain-like 38 212 - -
Lcy6g0106 631 Pfam Leucine rich repeat 83 129 IPR001611 GO:0005515(InterPro)
Lcy6g0106 631 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 402 608 - -
Lcy6g0106 631 ProSiteProfiles Protein kinase domain profile. 327 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0106 631 Gene3D Phosphorylase Kinase; domain 1 291 401 - -
Lcy6g0106 631 Gene3D Transferase(Phosphotransferase) domain 1 403 609 - -
Lcy6g0106 631 FunFam Probable inactive receptor kinase RLK902 26 185 - -
Lcy6g0106 631 FunFam pollen receptor-like kinase 1 296 401 - -
Lcy6g0106 631 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515(InterPro)
Lcy6g0106 631 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515(InterPro)
Lcy6g0106 631 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515(InterPro)
Lcy6g0106 631 SUPERFAMILY Protein kinase-like (PK-like) 331 595 IPR011009 -
Lcy6g0106 631 PANTHER OS05G0588300 PROTEIN 9 612 IPR050994 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0106 Lcy-Chr6:993662 Lcy8g1684 Lcy-Chr8:43400948 2.10E-143 dispersed
Lcy12g1591 Lcy-Chr12:35990174 Lcy6g0106 Lcy-Chr6:993662 1.71E-205 wgd
Lcy12g0102 Lcy-Chr12:1336120 Lcy6g0106 Lcy-Chr6:993662 7.50E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65997 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0106 - - - 0.0