Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g0152 | ATGCCTTCATGGTGGGGGAAGCCATCATCCAAAGAAGTAAAGAAGAAAACGAGCAAGGAAAGTTTCATTGACTCATTACACCGTAAGTTTAAGAATTCACCTGAAGGTAAAGTAAGCAGTAGATCAGGAAGTTCTCGTAGACGTGGTGGTGACACTATATCTGAGAAGGGGTCTAAATCACCTCTATCAAGATCACCATCACCTTCCAAAGAAGTATCTAGATGTCAAAGTTTTGCTGAAAGATCACGTTCTCACCAACTTCCACTTCCAGAACTGCACCCTGTAGGTGTAGGTCGTACAGATTCTGGGATTAGTGTGACAGCAAAATCAAAATTAGAGAGAAGCTCCAAGACACCTTCATTCTTACCCCTCCCTAGACCTGCATGTATTCGAAGTAGGCCAGATCCTGCAGATTTGGATGGAGACTTGGTCACTGGTTCAGTCTCTGGTGAGTCCTCAAGTGATAGTGACGATCCCAATGATTCACGTCAACGTAGTCCTCAGGCAACTGACTATGACACTGGGACTAGAACTGTGATAGGTTCTACTGAACCTAGTGCAACTCTCAAAGATCAGTCTTCTACTGTCGTGCAAATAAATTTAAAAGAGGGCAAGAAATTGGAAAGTCTTTCATTTCCTCATAAGAATGCTTCATTACCTAAACGGAGGCCTTTGAGCAGCAATGTAACAAATCTACAAGTTCCTCGCCATGGGGCTTTCTTTAGCGCTCCAGATAGTTCCATGTCTAGTCCCTCTAGAAGTCCTATGAGGGTATTTAGCACTGAGCAAGTCATGAACACTGCTGTTTGGGCTGGAAAGTCTCACCCAGATGTCATTTTAGGTGGATCTGGCCACTGCTCCAGTCCTGGTTCTGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCGGGCCACTTCTTTTGGCAACAAAGTAGGGGTAGCCCCGAATATTCTCCAGTACCTAGTTCTCGAATGACTAGCCCCGGCCCAAGCTCCAGAATTCAAAGTGGTGCTGTCACACCTATTCATCCTAGAGCAGGAGCTCCACCTGCTGAGTCACAAACATGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATAGCAATCTCAAACTCTTCTCCATTTTCTCATTCAAATTCAGCAGTGACATCTCCTTCAGTGCCTAGGAGTCCAGGAAGGACAGAGACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTATTGGGTCGGGGCACATTTGGGCACGTATATGTTGGTTTTAATAGGCTTATAGTCTTATCCGATATAAGTGATTATGATACCTTCATTATGGTATTGATTCCTGAGAGTGGAGAAATGTGTGCAATGAAGGAGGTCACGTTATTTTCTGACGATGCAAAGTCTAAGGAAAGTGCTAAACAATTAATGCAGGAAATTGCTTTATTGAGTCGTTTACGGCATCCCAACATCGTGCAGTATTATGGTTCGGAAACAGTGGGTGATAAACTCTATATATATCTGGAATATGTATCTGGTGGCTCCATTTATAAATTACTACAAGAGTATGGACAATTTGGGGAACTAGCAATTCGTAGCTATACTCAACAAATACTATCAGGACTTGCATATTTGCATGCTAAAACTACAGTGCACAGAATTGAACTTCTAACCTCTTCAGGGATATCAAAGGAGCAAACATACTTGTTGACCCAAATGGTCGTGTTAAATTGGCAGACTTTGGGATGGCGAAGCATATCACTGGCCAATCATGTCCCCTGTCGTTTAAGGGAAGCCCTTACTGGATGGCACCTGAGGTCAGAATTTATTGCATCTGTAAGCGAAAGCGATAAATATATGATGATACATATGCCTGACCCGTCACTTTCCCAGGTCATTAAGAACTCAAATGGTTGCAACCTTGCCGTTGATATTTGGAGTCTTGGATGTACTGTTCTGGAGATGGCTACTACAAAGCCACCTTGGAGCCAGTATGAAGGGGTTGCTGCGATGTTTAAGATTGGCAATAGCAAAGAACTCCCAGTAATTCCAGAGCACCTCTCAGACGATGGGAAGGATTTTGTGAGACTATGTCTGCAACGAAACCCACATCATCGACCTACAGCTGCTCAACTTTTGGATCATCCTTTTGTCAAATATGCTGCACCTGTAGAGAGGCCTTTTTTGAGCTCTGAACCTTCTGATGCAACTCCTGGGGTTACAAACGGAGTGAAGATTTTGGGTATTGGTCAATCACGGACTACTTCTTTGGACTCAGATAGCAGACTTGCAATTCATTCTTCAAGAGTCTCAAAAGCTGTTCTTCATGCCAGCGAAATCAGTATTCCCAGAAACATATCATGTCCTGTTTCACCAATTGGAAGTCCTCTTTTGCACTCGCGATCACCTCAACATCCCAGTGGAAGAATGTCGCCTTCACCTATATCAAGTCCACGAACCACTTCGGGCTCGTCAACGCCTTTGACAGGATGTGGTGGTGCAATTCCTTACAACCACCTGAAACAAGCTATATACTTGCAAGAGGGATTTGGAAGCATGCCAAAGTCCTTAAATAACAGTCCGTACAGCAGTGGTCTCTCCTTCCATGATTCAAATCCCGATATTTTTCGAGGGTTGCAGCCTGGGACTCCCATCTTCTCTGAAATGATACCAGAAAATGATATCTTGGGAAAGCAGGTTGGAAGGCCTGCTTATGGTGAATTGTATGATGGACAGCAGGTCTTGGCTGATCGAGTGTCTCGACAGCTCCTGAGGGATCATGTTAAAACAAACCCTTCTCTTGATTTGAGTCCTAGCCCTACATTGTCTGGCCGCATGAATGGTATCTGA | 2850 | 44.46 | MPSWWGKPSSKEVKKKTSKESFIDSLHRKFKNSPEGKVSSRSGSSRRRGGDTISEKGSKSPLSRSPSPSKEVSRCQSFAERSRSHQLPLPELHPVGVGRTDSGISVTAKSKLERSSKTPSFLPLPRPACIRSRPDPADLDGDLVTGSVSGESSSDSDDPNDSRQRSPQATDYDTGTRTVIGSTEPSATLKDQSSTVVQINLKEGKKLESLSFPHKNASLPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRVFSTEQVMNTAVWAGKSHPDVILGGSGHCSSPGSGHNSGHNSMGGDMAGHFFWQQSRGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGAPPAESQTCWPDEKQTHRLPLPPIAISNSSPFSHSNSAVTSPSVPRSPGRTETPASPGSRWKKGKLLGRGTFGHVYVGFNRLIVLSDISDYDTFIMVLIPESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSETVGDKLYIYLEYVSGGSIYKLLQEYGQFGELAIRSYTQQILSGLAYLHAKTTVHRIELLTSSGISKEQTYLLTQMVVLNWQTLGWRSISLANHVPCRLREALTGWHLRSEFIASVSESDKYMMIHMPDPSLSQVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPVIPEHLSDDGKDFVRLCLQRNPHHRPTAAQLLDHPFVKYAAPVERPFLSSEPSDATPGVTNGVKILGIGQSRTTSLDSDSRLAIHSSRVSKAVLHASEISIPRNISCPVSPIGSPLLHSRSPQHPSGRMSPSPISSPRTTSGSSTPLTGCGGAIPYNHLKQAIYLQEGFGSMPKSLNNSPYSSGLSFHDSNPDIFRGLQPGTPIFSEMIPENDILGKQVGRPAYGELYDGQQVLADRVSRQLLRDHVKTNPSLDLSPSPTLSGRMNGI | 949 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1424354 | 1432099 | + | Maker00002974 | Lcy6g0152 | 634596 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g0152 | 949 | Pfam | Protein kinase domain | 632 | 718 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy6g0152 | 949 | Pfam | Protein kinase domain | 450 | 553 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy6g0152 | 949 | MobiDBLite | consensus disorder prediction | 371 | 403 | - | - | |
Lcy6g0152 | 949 | MobiDBLite | consensus disorder prediction | 286 | 412 | - | - | |
Lcy6g0152 | 949 | MobiDBLite | consensus disorder prediction | 313 | 340 | - | - | |
Lcy6g0152 | 949 | MobiDBLite | consensus disorder prediction | 797 | 830 | - | - | |
Lcy6g0152 | 949 | MobiDBLite | consensus disorder prediction | 1 | 192 | - | - | |
Lcy6g0152 | 949 | MobiDBLite | consensus disorder prediction | 103 | 117 | - | - | |
Lcy6g0152 | 949 | SUPERFAMILY | Protein kinase-like (PK-like) | 405 | 720 | IPR011009 | - | |
Lcy6g0152 | 949 | MobiDBLite | consensus disorder prediction | 932 | 949 | - | - | |
Lcy6g0152 | 949 | MobiDBLite | consensus disorder prediction | 793 | 830 | - | - | |
Lcy6g0152 | 949 | MobiDBLite | consensus disorder prediction | 165 | 192 | - | - | |
Lcy6g0152 | 949 | MobiDBLite | consensus disorder prediction | 56 | 83 | - | - | |
Lcy6g0152 | 949 | MobiDBLite | consensus disorder prediction | 9 | 54 | - | - | |
Lcy6g0152 | 949 | Gene3D | Transferase(Phosphotransferase) domain 1 | 579 | 725 | - | - | |
Lcy6g0152 | 949 | ProSiteProfiles | Protein kinase domain profile. | 410 | 718 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy6g0152 | 949 | MobiDBLite | consensus disorder prediction | 930 | 949 | - | - | |
Lcy6g0152 | 949 | Gene3D | Transferase(Phosphotransferase) domain 1 | 408 | 553 | - | - | |
Lcy6g0152 | 949 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 53 | 553 | IPR050538 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g1154 | Lcy-Chr1:10810632 | Lcy6g0152 | Lcy-Chr6:1424354 | 4.00E-96 | dispersed | |
Lcy4g1870 | Lcy-Chr4:44901404 | Lcy6g0152 | Lcy-Chr6:1424354 | 1.36E-49 | dispersed | |
Lcy6g0152 | Lcy-Chr6:1424354 | Lcy9g1314 | Lcy-Chr9:37904579 | 6.06E-30 | dispersed | |
Lcy12g0039 | Lcy-Chr12:651534 | Lcy6g0152 | Lcy-Chr6:1424354 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66001 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy6g0152 | K20717 | - | csv:101214961 | 1420.22 |