Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0152 ATGCCTTCATGGTGGGGGAAGCCATCATCCAAAGAAGTAAAGAAGAAAACGAGCAAGGAAAGTTTCATTGACTCATTACACCGTAAGTTTAAGAATTCACCTGAAGGTAAAGTAAGCAGTAGATCAGGAAGTTCTCGTAGACGTGGTGGTGACACTATATCTGAGAAGGGGTCTAAATCACCTCTATCAAGATCACCATCACCTTCCAAAGAAGTATCTAGATGTCAAAGTTTTGCTGAAAGATCACGTTCTCACCAACTTCCACTTCCAGAACTGCACCCTGTAGGTGTAGGTCGTACAGATTCTGGGATTAGTGTGACAGCAAAATCAAAATTAGAGAGAAGCTCCAAGACACCTTCATTCTTACCCCTCCCTAGACCTGCATGTATTCGAAGTAGGCCAGATCCTGCAGATTTGGATGGAGACTTGGTCACTGGTTCAGTCTCTGGTGAGTCCTCAAGTGATAGTGACGATCCCAATGATTCACGTCAACGTAGTCCTCAGGCAACTGACTATGACACTGGGACTAGAACTGTGATAGGTTCTACTGAACCTAGTGCAACTCTCAAAGATCAGTCTTCTACTGTCGTGCAAATAAATTTAAAAGAGGGCAAGAAATTGGAAAGTCTTTCATTTCCTCATAAGAATGCTTCATTACCTAAACGGAGGCCTTTGAGCAGCAATGTAACAAATCTACAAGTTCCTCGCCATGGGGCTTTCTTTAGCGCTCCAGATAGTTCCATGTCTAGTCCCTCTAGAAGTCCTATGAGGGTATTTAGCACTGAGCAAGTCATGAACACTGCTGTTTGGGCTGGAAAGTCTCACCCAGATGTCATTTTAGGTGGATCTGGCCACTGCTCCAGTCCTGGTTCTGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCGGGCCACTTCTTTTGGCAACAAAGTAGGGGTAGCCCCGAATATTCTCCAGTACCTAGTTCTCGAATGACTAGCCCCGGCCCAAGCTCCAGAATTCAAAGTGGTGCTGTCACACCTATTCATCCTAGAGCAGGAGCTCCACCTGCTGAGTCACAAACATGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATAGCAATCTCAAACTCTTCTCCATTTTCTCATTCAAATTCAGCAGTGACATCTCCTTCAGTGCCTAGGAGTCCAGGAAGGACAGAGACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTATTGGGTCGGGGCACATTTGGGCACGTATATGTTGGTTTTAATAGGCTTATAGTCTTATCCGATATAAGTGATTATGATACCTTCATTATGGTATTGATTCCTGAGAGTGGAGAAATGTGTGCAATGAAGGAGGTCACGTTATTTTCTGACGATGCAAAGTCTAAGGAAAGTGCTAAACAATTAATGCAGGAAATTGCTTTATTGAGTCGTTTACGGCATCCCAACATCGTGCAGTATTATGGTTCGGAAACAGTGGGTGATAAACTCTATATATATCTGGAATATGTATCTGGTGGCTCCATTTATAAATTACTACAAGAGTATGGACAATTTGGGGAACTAGCAATTCGTAGCTATACTCAACAAATACTATCAGGACTTGCATATTTGCATGCTAAAACTACAGTGCACAGAATTGAACTTCTAACCTCTTCAGGGATATCAAAGGAGCAAACATACTTGTTGACCCAAATGGTCGTGTTAAATTGGCAGACTTTGGGATGGCGAAGCATATCACTGGCCAATCATGTCCCCTGTCGTTTAAGGGAAGCCCTTACTGGATGGCACCTGAGGTCAGAATTTATTGCATCTGTAAGCGAAAGCGATAAATATATGATGATACATATGCCTGACCCGTCACTTTCCCAGGTCATTAAGAACTCAAATGGTTGCAACCTTGCCGTTGATATTTGGAGTCTTGGATGTACTGTTCTGGAGATGGCTACTACAAAGCCACCTTGGAGCCAGTATGAAGGGGTTGCTGCGATGTTTAAGATTGGCAATAGCAAAGAACTCCCAGTAATTCCAGAGCACCTCTCAGACGATGGGAAGGATTTTGTGAGACTATGTCTGCAACGAAACCCACATCATCGACCTACAGCTGCTCAACTTTTGGATCATCCTTTTGTCAAATATGCTGCACCTGTAGAGAGGCCTTTTTTGAGCTCTGAACCTTCTGATGCAACTCCTGGGGTTACAAACGGAGTGAAGATTTTGGGTATTGGTCAATCACGGACTACTTCTTTGGACTCAGATAGCAGACTTGCAATTCATTCTTCAAGAGTCTCAAAAGCTGTTCTTCATGCCAGCGAAATCAGTATTCCCAGAAACATATCATGTCCTGTTTCACCAATTGGAAGTCCTCTTTTGCACTCGCGATCACCTCAACATCCCAGTGGAAGAATGTCGCCTTCACCTATATCAAGTCCACGAACCACTTCGGGCTCGTCAACGCCTTTGACAGGATGTGGTGGTGCAATTCCTTACAACCACCTGAAACAAGCTATATACTTGCAAGAGGGATTTGGAAGCATGCCAAAGTCCTTAAATAACAGTCCGTACAGCAGTGGTCTCTCCTTCCATGATTCAAATCCCGATATTTTTCGAGGGTTGCAGCCTGGGACTCCCATCTTCTCTGAAATGATACCAGAAAATGATATCTTGGGAAAGCAGGTTGGAAGGCCTGCTTATGGTGAATTGTATGATGGACAGCAGGTCTTGGCTGATCGAGTGTCTCGACAGCTCCTGAGGGATCATGTTAAAACAAACCCTTCTCTTGATTTGAGTCCTAGCCCTACATTGTCTGGCCGCATGAATGGTATCTGA 2850 44.46 MPSWWGKPSSKEVKKKTSKESFIDSLHRKFKNSPEGKVSSRSGSSRRRGGDTISEKGSKSPLSRSPSPSKEVSRCQSFAERSRSHQLPLPELHPVGVGRTDSGISVTAKSKLERSSKTPSFLPLPRPACIRSRPDPADLDGDLVTGSVSGESSSDSDDPNDSRQRSPQATDYDTGTRTVIGSTEPSATLKDQSSTVVQINLKEGKKLESLSFPHKNASLPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRVFSTEQVMNTAVWAGKSHPDVILGGSGHCSSPGSGHNSGHNSMGGDMAGHFFWQQSRGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGAPPAESQTCWPDEKQTHRLPLPPIAISNSSPFSHSNSAVTSPSVPRSPGRTETPASPGSRWKKGKLLGRGTFGHVYVGFNRLIVLSDISDYDTFIMVLIPESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSETVGDKLYIYLEYVSGGSIYKLLQEYGQFGELAIRSYTQQILSGLAYLHAKTTVHRIELLTSSGISKEQTYLLTQMVVLNWQTLGWRSISLANHVPCRLREALTGWHLRSEFIASVSESDKYMMIHMPDPSLSQVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPVIPEHLSDDGKDFVRLCLQRNPHHRPTAAQLLDHPFVKYAAPVERPFLSSEPSDATPGVTNGVKILGIGQSRTTSLDSDSRLAIHSSRVSKAVLHASEISIPRNISCPVSPIGSPLLHSRSPQHPSGRMSPSPISSPRTTSGSSTPLTGCGGAIPYNHLKQAIYLQEGFGSMPKSLNNSPYSSGLSFHDSNPDIFRGLQPGTPIFSEMIPENDILGKQVGRPAYGELYDGQQVLADRVSRQLLRDHVKTNPSLDLSPSPTLSGRMNGI 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1424354 1432099 + Maker00002974 Lcy6g0152 634596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0152 949 Pfam Protein kinase domain 632 718 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0152 949 Pfam Protein kinase domain 450 553 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0152 949 MobiDBLite consensus disorder prediction 371 403 - -
Lcy6g0152 949 MobiDBLite consensus disorder prediction 286 412 - -
Lcy6g0152 949 MobiDBLite consensus disorder prediction 313 340 - -
Lcy6g0152 949 MobiDBLite consensus disorder prediction 797 830 - -
Lcy6g0152 949 MobiDBLite consensus disorder prediction 1 192 - -
Lcy6g0152 949 MobiDBLite consensus disorder prediction 103 117 - -
Lcy6g0152 949 SUPERFAMILY Protein kinase-like (PK-like) 405 720 IPR011009 -
Lcy6g0152 949 MobiDBLite consensus disorder prediction 932 949 - -
Lcy6g0152 949 MobiDBLite consensus disorder prediction 793 830 - -
Lcy6g0152 949 MobiDBLite consensus disorder prediction 165 192 - -
Lcy6g0152 949 MobiDBLite consensus disorder prediction 56 83 - -
Lcy6g0152 949 MobiDBLite consensus disorder prediction 9 54 - -
Lcy6g0152 949 Gene3D Transferase(Phosphotransferase) domain 1 579 725 - -
Lcy6g0152 949 ProSiteProfiles Protein kinase domain profile. 410 718 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0152 949 MobiDBLite consensus disorder prediction 930 949 - -
Lcy6g0152 949 Gene3D Transferase(Phosphotransferase) domain 1 408 553 - -
Lcy6g0152 949 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 53 553 IPR050538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1154 Lcy-Chr1:10810632 Lcy6g0152 Lcy-Chr6:1424354 4.00E-96 dispersed
Lcy4g1870 Lcy-Chr4:44901404 Lcy6g0152 Lcy-Chr6:1424354 1.36E-49 dispersed
Lcy6g0152 Lcy-Chr6:1424354 Lcy9g1314 Lcy-Chr9:37904579 6.06E-30 dispersed
Lcy12g0039 Lcy-Chr12:651534 Lcy6g0152 Lcy-Chr6:1424354 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66001 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0152 K20717 - csv:101214961 1420.22