Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0158 ATGAATCCGGCCGCCGTCGAAGCTCCGTTCATAGTTCTGTTTCTGCTTGCCGCAGCGCTGCCGTGGCCGCCGCTCGCCGGAGCGCGGCTTCTGGTGGAGATGACGGTGGTTCGCGACGCCTCTTCCATTGGAGCCTTTTTGCTTTTGGATTTGGATAAGTTTGTTTGGACGGAAGCTTGCCGGCGTACCACCTGGACAGAGGATTCGGCGCCGGAGCGGGAAACTGGCTTCTACAGTTCGAGAAATCCTGTCTGTTCTCTAGAACCAACACGACATCGTTTCTTAGATTTGTCCGCACAATCTCCTGTGCTGTGTTCGGCTTGCCGTGGGTTGGGACTATTGTCGGGTGGTGGGTGGTGCAATGATTTAAAGTCTTGTTTGGAAAGAGCCAATACTCGAAGAGGATCAACGCGTTTGATGACCAAATGGGAAGACTTCAATGGCATTCTTAGCAATAATGCCTCTTTAAACCCAGATTTTTATAACTGGAACCGTGTGAAACTCAGGTATTGTGATGGAGCCTCATTTGGAGGAGATGCCTTGTTTGACAATGGGACGTCGCTGCTTTATTTCAAAGGGCAAAAGATATGGGAATCCATCATTCTTGACCTTCTACCAAAAGGATTGGGGACAGCAAGGAAGGCTTTGCTTTCTGGTTGCTCTGCTGGAGGCCTATCAACTTTTTTGCATTGTGAAAATTTCACCAACTATTTGCCAAAGAATGCCACTGTCAAATGCTTGAGTGATGCTGGCTTTTTTCTTGACTTAAGAGATATAGGTTTAAACCACACCATGAGGAACTTCTACAAGGATCTTGTGGCTCTGCAGGGGATGGAGCCAAATCTGAATGGAAACTGCACAGCCTCTTCTTACTTTCCAGATTTGTGCATATTCCCACAGTATTCATTGAAGTACATAACAACACCATTTTTCATTCTGAATTCAGCATATGATGTTTACCAATTTCATCATGGATTGGTGCCACCATCTGCTGATTTACATGGACATTGGAATCACTGCAAACTCAATCCAGCTGAGTGTAGTCCACAGCAGATTGAGGTACTGCAAGGTCTAAGAATGAGCATGCTTTCTGCATTAAGATTATTCTATGAATATTCAAGCAGAGGAGGAATGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGAGTCACAAGACACATGGTTTGCAGAGGACTCCCCAACAATAGACAACAAGACTATAGCAGAAGCAGTTGGAGATTGGTACTTTAACAGAAGGAACATAAAGGAGATTGATTGTGCTTATCCATGTGACTCTACTTGCCATAATCTTATACCATAA 1323 44.82 MNPAAVEAPFIVLFLLAAALPWPPLAGARLLVEMTVVRDASSIGAFLLLDLDKFVWTEACRRTTWTEDSAPERETGFYSSRNPVCSLEPTRHRFLDLSAQSPVLCSACRGLGLLSGGGWCNDLKSCLERANTRRGSTRLMTKWEDFNGILSNNASLNPDFYNWNRVKLRYCDGASFGGDALFDNGTSLLYFKGQKIWESIILDLLPKGLGTARKALLSGCSAGGLSTFLHCENFTNYLPKNATVKCLSDAGFFLDLRDIGLNHTMRNFYKDLVALQGMEPNLNGNCTASSYFPDLCIFPQYSLKYITTPFFILNSAYDVYQFHHGLVPPSADLHGHWNHCKLNPAECSPQQIEVLQGLRMSMLSALRLFYEYSSRGGMFINSCFAHCQSESQDTWFAEDSPTIDNKTIAEAVGDWYFNRRNIKEIDCAYPCDSTCHNLIP 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1483112 1494031 + Maker00002650 Lcy6g0158 634602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0158 440 PANTHER NOTUM-RELATED 114 438 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
Lcy6g0158 440 Pfam Pectinacetylesterase 114 420 IPR004963 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0158 Lcy-Chr6:1483112 Lcy6g0754 Lcy-Chr6:7417325 4.06E-113 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0158 K19882 - csv:101216160 674.855