Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g0159 | ATGCCTCTAGCCGCCCCGGTTTCACCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCACGAGCAGATTATCACGTGGAGCGAAGGGTTTCAATTATGGTTTTGTTTGTGAAAGTGGTGATTTCATGGTGGATTTTGCCCATTTTGGCTCATCAAAAGCTGAAGAGAAATGGATTTGAAGGTCCTTCTCCAAGTTTTCCTCTTGGAAACATTGCTGAGATGAAGAAGACGATGAAAGCTGCGGCAGCCATTAATGGCGGATCCTTTGCTTCTTCATCAAATAATGTCTCCCATGATATTCATTCCATTGTTTTCCCTCACTTCGCTCAATGGCAGGCCTCTTATGGGAAGAAGTTTGTATATTGGTTGGGGACAGAGCCATTTTTGTACATTGCAGATCCACAGTTTGTGAAGAAGATATCTGAAGCTGTGATGGGGAAGGGCTGGGGAAAGCCAGCCGTCTTCAGAAACGACAGAGAACCGATGTTCGGCGATGGCCTCGTCATGACCGAAGGCGACGACTGGATTCGCCATCGACATATCCTCACTCCTGCCTTCAACCCCGCTAACTTGAAGGCAATGACAAAGTTCATGGTGGAGTCCACCACTCAAATGCTAAACAAGTGGAGCAGCCTCGTAAACTCCGCCCAACCGGAAATCGACGTGGAGAGAGAAATCACCGCCACCGCCGGCGACATTATCGCTCAGGCCAGCTTCGGAATTTCTAACGGCGGCGGCCGAGACGCCTTCAACAGTCTCAGAGCTCTTCAATTCACTCTCTTCCAAAACAGCACTTACGTCGGAGTTCCTTTCAGCGGCCTCTTTCTCTGTCCGGCCCGAACCCTAGCCGCCAAGCGACTCGGCGCCGAAATCGATCGCCTCTTTTTATCGGTCATATCGGAAAGGAAACAGTCGGAGGAAAATTCCTCTTCCTCCGATTTGCTCAGCCGGTTGATCGAGAGTCAGAGGAACGGCAGCGGCGGCGGCAAGATGAGGCTGACGACGAGAGAACTGGTGGACGAGTGCAAGACTTTCTTCTTTGGCGGCCACGAGACGACGGCGCTGGCGATCAGTTGGACGCTGCTGCTGCTGGCGACTCGGCCGGAGTGGCAGAACATTTTACGGGAGGAGATTAAAGAAGTGATCGGAGATAAAGAGATTGATTTCGCCATGCTTTCTGGACTAAGAAAGATGGGATGGGTGTTCAATGAGGTACTTAGGCTATATCCATCAGCCCCAAACATACAAAGACAAGCAAAAGGCGACATCAAAGTCGGCGATGTGACGATCCCAAAAGGGACCAACATATGGATAGACGTCGTATCCATGCATCACGACCCGACCCTTTGGGGTGAGGATGTCAACGAGTTCAAGCCCGAGCGGTTCGAGAAGGACAGTATTCATGGCGGGTGCAACCACAAGATGGGATATTTGCCATTTGGTTTTGGAGGGAGAATGTGCATTGGTAGAAACTTGTCTTCTATGGAGTATAAGATTGTGCTAACCCTAATTCTCTCTAGGTTTTCACTCTCTCTTTCTCCTTCCTATTCTCATTCTCCTGCTATTTTGCTCTCTTTGAGACCTGCCCATGGCCTCCCTCTCATTGTAAAGCCCCTCCAACCTTAA | 1638 | 50.0 | MPLAAPVSPGLSRNASEFLKTLGARADYHVERRVSIMVLFVKVVISWWILPILAHQKLKRNGFEGPSPSFPLGNIAEMKKTMKAAAAINGGSFASSSNNVSHDIHSIVFPHFAQWQASYGKKFVYWLGTEPFLYIADPQFVKKISEAVMGKGWGKPAVFRNDREPMFGDGLVMTEGDDWIRHRHILTPAFNPANLKAMTKFMVESTTQMLNKWSSLVNSAQPEIDVEREITATAGDIIAQASFGISNGGGRDAFNSLRALQFTLFQNSTYVGVPFSGLFLCPARTLAAKRLGAEIDRLFLSVISERKQSEENSSSSDLLSRLIESQRNGSGGGKMRLTTRELVDECKTFFFGGHETTALAISWTLLLLATRPEWQNILREEIKEVIGDKEIDFAMLSGLRKMGWVFNEVLRLYPSAPNIQRQAKGDIKVGDVTIPKGTNIWIDVVSMHHDPTLWGEDVNEFKPERFEKDSIHGGCNHKMGYLPFGFGGRMCIGRNLSSMEYKIVLTLILSRFSLSLSPSYSHSPAILLSLRPAHGLPLIVKPLQP | 545 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1496189 | 1503806 | - | Maker00002423 | Lcy6g0159 | 634603 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g0159 | 545 | Gene3D | Cytochrome P450 | 49 | 544 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0159 | 545 | PRINTS | P450 superfamily signature | 404 | 415 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0159 | 545 | PRINTS | P450 superfamily signature | 352 | 369 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0159 | 545 | PRINTS | P450 superfamily signature | 491 | 502 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0159 | 545 | PRINTS | P450 superfamily signature | 482 | 491 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0159 | 545 | Pfam | Cytochrome P450 | 108 | 519 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0159 | 545 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 484 | 493 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy6g0159 | 545 | PRINTS | E-class P450 group I signature | 116 | 135 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0159 | 545 | PRINTS | E-class P450 group I signature | 481 | 491 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0159 | 545 | PRINTS | E-class P450 group I signature | 341 | 358 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0159 | 545 | PRINTS | E-class P450 group I signature | 491 | 514 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0159 | 545 | PRINTS | E-class P450 group I signature | 361 | 387 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy6g0159 | 545 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 41 | 537 | IPR050665 | GO:0004497(PANTHER) | |
| Lcy6g0159 | 545 | SUPERFAMILY | Cytochrome P450 | 108 | 542 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy6g0159 | Lcy-Chr6:1496189 | Lcy7g1100 | Lcy-Chr7:11903376 | 2.36E-95 | dispersed | |
| Lcy12g0026 | Lcy-Chr12:541690 | Lcy6g0159 | Lcy-Chr6:1496189 | 4.44E-229 | wgd |
Pathway information