Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0180 ATGGGTATGGAGTTGAAACGCTTTGTTCTCATTTTCATCGTCTCCTTCGAGCTCTGCATTTTGAGCTCCAATGGCGTAACAGACCAGAATGAGATTATTATCGAGAGGGAAAGCTTGATTTCTTTCAAAGATTCGCTAGAGACCTCAGAAATTCTGCCATGGAACTCATCGGTTCCTCACTGTTTATGGGCCGGAGTTTCTTGCCGACTCGGTCGAGTTACAGAGCTCTCTCTTTCAGCTCTTTCGCTCAAAGGCCGACTCTCTGCTTCCCTTTTCAACATTTTGAGCCTCTCTGTTCTTGACCTTTCAAACAACTTCCTCTATGGCTCAATCCCACGTCAGATATCCAATCTTCGGAGCTTGAAGGTGCTCGCTCTCGGCCAAAATCAGTTTTCCGGCGACTTCCCTATCGAACTCACTGAGTTGACTCAGCTGGAGAATCTCAAGCTGGGGACTAATTTATTCACAGGTAAAATCCCGCCGGAGCTTGGAAATTTGAAGCTGCTACGGACCCTTGACCTCTCCGGCAATGCCTTCGTCGGAAATGTTCCGGCCCACATCGGAAATTTGACGAGGATTTTTTCCTTAGACCTTGGCAACAATCTTTTATCAGGTCCACTCCCATTGACCATCTTCACCGAGCTTAAATCTTTAACTTCTTTGGATATTTCGAACAACTCGTTTTCTGGTTCAATCCCGCCTGAAATTGGTAATCTAGAGCATTTGACTGACCTTTACATCGGCATTAACCACTTTTCCGGTGCGTTGCCGCCTGAAGTTGGTAACCTCGTATTGCTCGAGAACTTTTTTTCGCCTTCTTGTTCTCTAACTGGTCCATTGCCTGAAGAACTATCCAAGTTGAAATCATTGAGCAAACTGGACATTTCATACAACCCACTTGGGTGTTCTATCCCGAAATCGATTGGTGAGTTGCAGAACTTGACTATACTGAATCTGGTTTACACTGAGCTTAATGGTTCGATTCCTGCTGAGATTGGGAAGTGCAGAAATTTGAAGACATTGATGTTTTCATTCAACTTTCTATCTGGGGTGTTGCCACAAGAGCTTTCAGAGCTTCCCATGTTGACATTTTCTGCTGAGAGGAATCAGCTTTCTGGGCCATTACCTTCCTGGCTTGGCAAATGGAAAGATGTCGATTCTGTTTTGCTCTCGAGTAATCGGTTTACTGGGGAAATCCCACCTGAGATTGGAAATTGCTCGATGCTAACGCACCTTAGTTTGAGCAATAACTTGTTGACAGGTCCAATACCTAAAGAAATTTGTAATGCTGCATCCTTGATGGAGATTGATCTTGACAGTAATTTCCTTTCGGGTACGATTGACGACACGTTTGCGCTGTGTAGAAACCTTACACAGTTGGTTTTGGTAGACAATCAGATTGTTGGTACTATACCAGAGTATTTCTCAGACCTTCCCCTACTGGTAATCAACCTCGACTCTAATAACTTTACTGGTTCATTACCGAGAAGTATATGGAACTCAGTGGATTTGATGGAATTTTCTGCTGCAAATAACCGGTTGGAGGGTCATCTCCCTTCAGAAATTGGTTATGCAGCTTCACTTCAGAGGCTTGTTCTCAGCAACAATAGGTTGACGGGCACAATACCAGATGAGATTGGAAATCTCACAAACCTATCTGTTCTAAATTTGAATTCAAATCTGCTTGAAGGAACTATTCCAGCCATGCTTGGAGATTGTAGTGCTCTTACTACATTGGACCTTGGAAACAACAGTTTAAACGGGTCGATACCGGAAAAACTTGCAGATCTTGCTGAATTACAGTGCCTGGTTCTCTCTTACAACAAGTTATCTGGAGCAATACCTTCCAAGCCGTCTGCTTATTTTCAACAGGTGACTATTCCTGATTTGAGCTTTGTTCAGCATCATGGTGTTTTTGATCTATCTCATAATAGATTGTCTGGTACCATACCTGATGGCCTGGGGAAGTGTGTCGTAGTGGTGGATCTTTTACTGAACGATAATCTGCTTTCTGGAGAAATTCCCAGATCTCTCTCTCACTTAACAAACTTGACAACATTGGATTTGTCTGGCAATATGCTTACTGGTCCTATTCCCGCAGAGATCGGCGATGCTCTCAAGCTCCAAGGCCTGTATCTTGGGAGTAATCTCCTCATGGGAACGATCCCCAAAAGCTTGAGTCATTTGAGTAGCTTGGTAAAGTTGAACTTAACTGGTAATAAATTATCTGGTTCAGTTCCAAAAAGTCTTGGTGTTCTGAAAGCTTTAACTCATTTGGATTTAAGTTCTAATGAGTTGGATGGTGATCTTCCTTCTTCTCTGTCCAGCATGTTGAATCTTGTGGGGCTATATGTACAGGAGAACAGGCTTTCTGGTCAGGTTGTTGAACTTTTCCCAAGTTCCATGACATGGAAGATTGAAACTTTGAATTTGAGTAATAACTATTTCGAGGGCGTACTTCCACGAACATTGGGCAACCTTTCATACTTGACAACTTTGGATCTTCATGGAAATAAGTTCACGGGACCAATCCCTTCAGATCTTGGGGATCTTATGCAACTTGAGTACTTTGATGTTTCGAAAAACAGGCTGTCTGGAGAGATTCCAGAGAAAATATGCAGCCTGATCAACATGTTTTACCTGAATTTGGCAGAAAACAGTCTAGAAGGGCCAATTCCAAGAAGTGGCATTTGCCAGAATCTATCCAAAAGCTCACTTGTCGGTAACAAGGACCTTTGTGGGAGAATCATGGGTTTCAATTGCAAGATCAAAACCTTAGAGAGATCTGCAGTCTTGAATGCTTGGAGCGTTGCTGGGATTATCGTTGTAAGTGTTCTTATCATTCTTACCGTGGCATTCGCCATGCGAAAACAGATTACTAGAAGGCATAGAGATATTGATCCAGAAGAAATGGAGGAAAGCAAATTAAACAATTTCATAGACCCCAATCTCTATTTCTTAAGCAGCAGCAGATCGAAAGAGCCTTTGAGCATCAATGTGGCAATGTTCGAGCAGCCTCTTCTGAAGTTAACTTTGGTTGATATCCTTGAAGCAACCAATAACTTCTGTAAAACAAACATTATTGGAGATGGAGGATTTGGGACTGTGTACAAGGCCACTTTGCCTGATGGAAAAATTGTTGCTGTGAAGAAACTAAGTGAAGCAAAAACACAGGGGCACAGAGAATTTATTGCTGAAATGGAAACTCTAGGCAAAGTAAAGCACAATAATCTTGTTCCACTGCTTGGCTACTGCTCTCTTGGGGAGGAGAAGCTCCTTGTCTATGAGTATATGGTGAATGGTAGCTTGGATCTTTGGCTGAGAAACCGAACCGGTACTCTTGAAGTCCTTAACTGGGAGACTCGCTTCAAAGTCGCTTCAGGCGCAGCCCGTGGACTGGCATTTCTTCACCATGGATTCATCCCCCACATCATTCATAGGGATGTTAAAGCAAGCAACATACTCCTCAATGAAGACTTTGAACCAAAAGTTGCTGACTTTGGATTGGCCAGACTGATCAACGTTCTCGACTCGACCATTCTAAATGCTGATTCGAAGCATATGATGCTGCAAACTCTTCAGATTGCTTGTGTTTGCCTGTCGGAAAATCCAGCAAACAGGCCTTCCATGCTTCAGATTGAAGGAAAGATTACAACTGGCTAG 3663 43.02 MGMELKRFVLIFIVSFELCILSSNGVTDQNEIIIERESLISFKDSLETSEILPWNSSVPHCLWAGVSCRLGRVTELSLSALSLKGRLSASLFNILSLSVLDLSNNFLYGSIPRQISNLRSLKVLALGQNQFSGDFPIELTELTQLENLKLGTNLFTGKIPPELGNLKLLRTLDLSGNAFVGNVPAHIGNLTRIFSLDLGNNLLSGPLPLTIFTELKSLTSLDISNNSFSGSIPPEIGNLEHLTDLYIGINHFSGALPPEVGNLVLLENFFSPSCSLTGPLPEELSKLKSLSKLDISYNPLGCSIPKSIGELQNLTILNLVYTELNGSIPAEIGKCRNLKTLMFSFNFLSGVLPQELSELPMLTFSAERNQLSGPLPSWLGKWKDVDSVLLSSNRFTGEIPPEIGNCSMLTHLSLSNNLLTGPIPKEICNAASLMEIDLDSNFLSGTIDDTFALCRNLTQLVLVDNQIVGTIPEYFSDLPLLVINLDSNNFTGSLPRSIWNSVDLMEFSAANNRLEGHLPSEIGYAASLQRLVLSNNRLTGTIPDEIGNLTNLSVLNLNSNLLEGTIPAMLGDCSALTTLDLGNNSLNGSIPEKLADLAELQCLVLSYNKLSGAIPSKPSAYFQQVTIPDLSFVQHHGVFDLSHNRLSGTIPDGLGKCVVVVDLLLNDNLLSGEIPRSLSHLTNLTTLDLSGNMLTGPIPAEIGDALKLQGLYLGSNLLMGTIPKSLSHLSSLVKLNLTGNKLSGSVPKSLGVLKALTHLDLSSNELDGDLPSSLSSMLNLVGLYVQENRLSGQVVELFPSSMTWKIETLNLSNNYFEGVLPRTLGNLSYLTTLDLHGNKFTGPIPSDLGDLMQLEYFDVSKNRLSGEIPEKICSLINMFYLNLAENSLEGPIPRSGICQNLSKSSLVGNKDLCGRIMGFNCKIKTLERSAVLNAWSVAGIIVVSVLIILTVAFAMRKQITRRHRDIDPEEMEESKLNNFIDPNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATNNFCKTNIIGDGGFGTVYKATLPDGKIVAVKKLSEAKTQGHREFIAEMETLGKVKHNNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTGTLEVLNWETRFKVASGAARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLINVLDSTILNADSKHMMLQTLQIACVCLSENPANRPSMLQIEGKITTG 1220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1630080 1634296 - Maker00002922 Lcy6g0180 634624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0180 1220 Pfam Leucine Rich Repeat 389 406 IPR001611 GO:0005515(InterPro)
Lcy6g0180 1220 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515(InterPro)
Lcy6g0180 1220 Pfam Leucine Rich Repeat 731 752 IPR001611 GO:0005515(InterPro)
Lcy6g0180 1220 Pfam Leucine Rich Repeat 409 429 IPR001611 GO:0005515(InterPro)
Lcy6g0180 1220 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515(InterPro)
Lcy6g0180 1220 Pfam Leucine Rich Repeat 169 190 IPR001611 GO:0005515(InterPro)
Lcy6g0180 1220 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
Lcy6g0180 1220 Pfam Leucine Rich Repeat 683 703 IPR001611 GO:0005515(InterPro)
Lcy6g0180 1220 Pfam Leucine Rich Repeat 639 657 IPR001611 GO:0005515(InterPro)
Lcy6g0180 1220 Pfam Leucine Rich Repeat 756 777 IPR001611 GO:0005515(InterPro)
Lcy6g0180 1220 SUPERFAMILY RNI-like 368 614 - -
Lcy6g0180 1220 PRINTS Leucine-rich repeat signature 681 694 - -
Lcy6g0180 1220 PRINTS Leucine-rich repeat signature 218 231 - -
Lcy6g0180 1220 Pfam Leucine rich repeat 806 864 IPR001611 GO:0005515(InterPro)
Lcy6g0180 1220 Pfam Leucine rich repeat 527 586 IPR001611 GO:0005515(InterPro)
Lcy6g0180 1220 Pfam Leucine rich repeat 432 490 IPR001611 GO:0005515(InterPro)
Lcy6g0180 1220 SMART LRR_typ_2 166 190 IPR003591 -
Lcy6g0180 1220 SMART LRR_typ_2 729 752 IPR003591 -
Lcy6g0180 1220 SMART LRR_typ_2 681 705 IPR003591 -
Lcy6g0180 1220 SMART LRR_typ_2 753 777 IPR003591 -
Lcy6g0180 1220 SMART LRR_typ_2 94 118 IPR003591 -
Lcy6g0180 1220 SMART LRR_typ_2 549 573 IPR003591 -
Lcy6g0180 1220 SMART LRR_typ_2 287 311 IPR003591 -
Lcy6g0180 1220 SMART LRR_typ_2 827 851 IPR003591 -
Lcy6g0180 1220 SMART LRR_typ_2 215 239 IPR003591 -
Lcy6g0180 1220 Pfam Protein tyrosine and serine/threonine kinase 1026 1178 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g0180 1220 FunFam leucine-rich repeat receptor protein kinase EMS1 213 362 - -
Lcy6g0180 1220 Gene3D Ribonuclease Inhibitor 505 623 IPR032675 -
Lcy6g0180 1220 SMART serkin_6 1022 1219 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0180 1220 Gene3D Phosphorylase Kinase; domain 1 985 1097 - -
Lcy6g0180 1220 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 629 925 - -
Lcy6g0180 1220 SUPERFAMILY L domain-like 629 914 - -
Lcy6g0180 1220 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 681 1178 IPR051564 GO:0016020(PANTHER)
Lcy6g0180 1220 Pfam Leucine rich repeat N-terminal domain 35 68 IPR013210 -
Lcy6g0180 1220 FunFam Leucine-rich repeat receptor-like protein kinase 34 185 - -
Lcy6g0180 1220 Gene3D Ribonuclease Inhibitor 141 212 IPR032675 -
Lcy6g0180 1220 SMART LRR_sd22_2 94 120 - -
Lcy6g0180 1220 SMART LRR_sd22_2 753 782 - -
Lcy6g0180 1220 SMART LRR_sd22_2 573 599 - -
Lcy6g0180 1220 SMART LRR_sd22_2 851 877 - -
Lcy6g0180 1220 SMART LRR_sd22_2 215 241 - -
Lcy6g0180 1220 SMART LRR_sd22_2 287 313 - -
Lcy6g0180 1220 SMART LRR_sd22_2 681 713 - -
Lcy6g0180 1220 FunFam serine/threonine-protein kinase BRI1-like 2 984 1097 - -
Lcy6g0180 1220 SUPERFAMILY Protein kinase-like (PK-like) 1003 1213 IPR011009 -
Lcy6g0180 1220 Gene3D Ribonuclease Inhibitor 624 923 IPR032675 -
Lcy6g0180 1220 Gene3D Ribonuclease Inhibitor 213 364 IPR032675 -
Lcy6g0180 1220 FunFam Uncharacterized protein 363 627 - -
Lcy6g0180 1220 ProSiteProfiles Protein kinase domain profile. 1022 1220 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g0180 1220 SUPERFAMILY L domain-like 54 363 - -
Lcy6g0180 1220 Gene3D Transferase(Phosphotransferase) domain 1 1098 1188 - -
Lcy6g0180 1220 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1144 1156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g0180 1220 Gene3D Ribonuclease Inhibitor 365 429 IPR032675 -
Lcy6g0180 1220 Gene3D Ribonuclease Inhibitor 430 504 IPR032675 -
Lcy6g0180 1220 Gene3D Ribonuclease Inhibitor 34 140 IPR032675 -
Lcy6g0180 1220 ProSitePatterns Protein kinases ATP-binding region signature. 1028 1051 IPR017441 GO:0005524(InterPro)
Lcy6g0180 1220 FunFam Os07g0541700 protein 1098 1186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0180 Lcy-Chr6:1630080 Lcy6g0610 Lcy-Chr6:5821023 1.86E-47 dispersed
Lcy6g0180 Lcy-Chr6:1630080 Lcy7g1441 Lcy-Chr7:24257963 4.10E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66003 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0180 - - - 0.0