Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0182 ATGCCTAGTGGTGCAATTGCTGACGAGAGCTTTCTGGCTTACCCAATTCCCAGTTCAATGCCTAGCTCCTCTGAATTCTCCAGTTCCATACGGAAAATGGATGGTTATGGCGAAGTGTGTCTGCTTGGAGACAGCTTTGATCAGAGTGGAGTTGTGAGGACTAGGGAAGATGAATATGATAGCAGATCAGGCAGCGACAACATCGATGGTGCTGTATCTGGGGATGATCAAGATGCTAATGACGAACAACCACCAAAAAGGAAGAAGTACCATAGGCATACTCCCCATCAGATCCAAGAGCTTGAGATGTATATCTCTTCATTTGCTTATTTGATTGTTTTGGCTTTCGGTAACGCTTTCTTCAAGGAATGTCCTCATCCTGATGATAAACAAAGGAGTGAGCTCAGTAGGAGGCTTGGTTTGGAGACAAAGCAAGTGAAATTTTGGTTTCAAAATCGGCGAACACAGATGAAGACACAAATAGAACGCCATGAGAATGCAATTCTCAAGCAAGAAAACGATAAGCTCCGGGCCGAGAATAGTGTGATGAAGGATGCTATTTCTAACCCAACGTGCAATACGTGTGGTGGCCCTTCAATTCCTGTTCATCTATCATTCGAAGAACACCAGCTTAGGATTGAAAATGCCAGATTAAGGGATGAACTGCACCGGTTGTATAGTGTCACCAACAAGTTCTTGGGCTGGCCACCCTTTGTCAATCATGGCTCTTCACCGAGTTCTGACTCGTGCTTGGAACTTTCTGTAGGAAGAAATGGAATCGGAAGTTTGAGTACCATTTCTGATCCTATTCCTATGGGGCTTAACTTGGGAAATGGACTTTTCGGTGCTGGCCCTGTGATGCCTACTGGTAAGCCTGAAATAGGCATGCCAGGCAATGATATACCACTTGAGAGAACAATATGTGTGGATCTTGCTTTGGCAGCTATGAATGAATTGGTTAAGATGGCTCAAATGGATGGTCCCCTTTGGATCAGAAGTCAGGATGGCAGTGGCAAAGAGACACTGAACCTTGACGAATATTCAAGAACATTTCCTTCTTCAGCTGGCATGAAGCACAGTAATTGGACAACAGAGGCGACCAGAGATACTACTATGGTCATCATCAACAGCTTGGCACTTGTTGAGACGTTGATGGACGCAAACCGATGGGCAGAAATGTTTCCTTGCTTGATTGCTAGAGCTACTACAATCGATGTGATATCAAGTGGCATGGGTGGAACTAGAAATGGTGCATTACAACTGATGCACGCTGAACTTCGAGTACTTTCCCCGCTCGTTCCTGTTCGTACACTTAAGTTCCTCCGCTTCTGCAAGCAGCATGCTGATGGTCTATGGGCTATAGTTGATGTTTCCATCGGAGAAGGTTCAAATTCAAACTCGTTTTTTGGTTGCAGGAGGCTCCCTTCGGGCTGTGTCGTACAAGATATGCCTAATGGTTTTTCCAAGGTAATTGCTAATCTTCAGGTTACATGGGTGGAACATACAGAATATGATGAGACTGTTATGCACCAACTTTACCGCCAGTTAATTCGTTCAGGCATCGGCTTCGGTTCACAACGGTGGCTTGCTACCCTTCAAAGACAATGCGACTGTCTGGCGATTCTGATGTCTTCTACTATCCCCACTGAAGATCCTACAGGAATATCGCCATGTGGTAAGAGAAGTTTGTTGAAACTCTCCCAACGGATGGTCGATAACTTTTGTTCTGGGGTTTGTACTTCGACTTTGCATAAGTGGGACAAGCTTGTTGTTGGCAATATTAGTGAGGATGTAAAAGTGATGGCTAGAAAGAGCATCAACGATCCTGGCGAGCCACCGGGTATCGTGTTGAGTGCTGCAACTTCTGTTTGGATGCCAGTAACTCAACAGAGGTTGTTTGCATTCTTGCAAGACGAGTGCTTACGGAGTGAGTGGGACATTTTATCCAACGGCAGGCCAATGCTAGAGATGCTTCACATCTCGAAAGGCCAGGGACCAGATAACCGTGTTTCTCTTCTGCGTGCTAATCCCATGAATGCTAATGAGAGCACCATGCTCATATTGCAAGAGACTTGGACTGATATATCAGGCTCACTGGTTGTCTACGCTCCAGTCGATACAGCCTCGGTTAATTTGGTGATGCGTGGAGGAGATTCTGCTTATGTATCACTACTCCCATCAGGATTTGCCATTCTCCCTGATGGCCCATGCAGCTATGCTTGTACAAACAACGACAAAGACGCTTCGATCAAGTCAGACATCAACGGTAGCCATGGTGCTGGATGCCTGCTCACAGTCGCATTCCAAATTTTGGTGAATAGCCTTCCAACAGCCAAACTCACCGTGGAGTCAGTTGAGACAGTTAACAATCTCATTTCTTGCACCATCCAAAAGATCAAAACCGCCCTTCAAGTATCGTGA 2421 45.64 MPSGAIADESFLAYPIPSSMPSSSEFSSSIRKMDGYGEVCLLGDSFDQSGVVRTREDEYDSRSGSDNIDGAVSGDDQDANDEQPPKRKKYHRHTPHQIQELEMYISSFAYLIVLAFGNAFFKECPHPDDKQRSELSRRLGLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAISNPTCNTCGGPSIPVHLSFEEHQLRIENARLRDELHRLYSVTNKFLGWPPFVNHGSSPSSDSCLELSVGRNGIGSLSTISDPIPMGLNLGNGLFGAGPVMPTGKPEIGMPGNDIPLERTICVDLALAAMNELVKMAQMDGPLWIRSQDGSGKETLNLDEYSRTFPSSAGMKHSNWTTEATRDTTMVIINSLALVETLMDANRWAEMFPCLIARATTIDVISSGMGGTRNGALQLMHAELRVLSPLVPVRTLKFLRFCKQHADGLWAIVDVSIGEGSNSNSFFGCRRLPSGCVVQDMPNGFSKVIANLQVTWVEHTEYDETVMHQLYRQLIRSGIGFGSQRWLATLQRQCDCLAILMSSTIPTEDPTGISPCGKRSLLKLSQRMVDNFCSGVCTSTLHKWDKLVVGNISEDVKVMARKSINDPGEPPGIVLSAATSVWMPVTQQRLFAFLQDECLRSEWDILSNGRPMLEMLHISKGQGPDNRVSLLRANPMNANESTMLILQETWTDISGSLVVYAPVDTASVNLVMRGGDSAYVSLLPSGFAILPDGPCSYACTNNDKDASIKSDINGSHGAGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTIQKIKTALQVS 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1654579 1659893 - Maker00002782 Lcy6g0182 634626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0182 806 CDD homeodomain 87 160 IPR001356 GO:0003677(InterPro)
Lcy6g0182 806 SMART HOX_1 86 164 IPR001356 GO:0003677(InterPro)
Lcy6g0182 806 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 74 804 IPR042160 -
Lcy6g0182 806 Coils Coil 154 186 - -
Lcy6g0182 806 SMART START_1 310 538 IPR002913 GO:0008289(InterPro)
Lcy6g0182 806 SUPERFAMILY Homeodomain-like 71 160 IPR009057 -
Lcy6g0182 806 FunFam Homeobox-leucine zipper protein HDG1 116 176 - -
Lcy6g0182 806 MobiDBLite consensus disorder prediction 52 94 - -
Lcy6g0182 806 ProSitePatterns 'Homeobox' domain signature. 135 158 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy6g0182 806 Pfam Homeodomain 119 158 IPR001356 GO:0003677(InterPro)
Lcy6g0182 806 SUPERFAMILY Bet v1-like 567 800 - -
Lcy6g0182 806 SUPERFAMILY Bet v1-like 304 538 - -
Lcy6g0182 806 ProSiteProfiles 'Homeobox' domain profile. 84 160 IPR001356 GO:0003677(InterPro)
Lcy6g0182 806 ProSiteProfiles START domain profile. 301 541 IPR002913 GO:0008289(InterPro)
Lcy6g0182 806 MobiDBLite consensus disorder prediction 1 28 - -
Lcy6g0182 806 Gene3D - 73 176 - -
Lcy6g0182 806 CDD START_ArGLABRA2_like 310 536 - -
Lcy6g0182 806 Pfam START domain 311 537 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0564 Lcy-Chr4:6910018 Lcy6g0182 Lcy-Chr6:1654579 1.39E-233 dispersed
Lcy6g0182 Lcy-Chr6:1654579 Lcy8g1446 Lcy-Chr8:41124241 4.36E-227 dispersed
Lcy11g1940 Lcy-Chr11:43090776 Lcy6g0182 Lcy-Chr6:1654579 6.48E-219 wgd
Lcy13g0637 Lcy-Chr13:8674854 Lcy6g0182 Lcy-Chr6:1654579 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20220 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0182 K09338 - csv:101218216 1382.47