Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g0188 ATGGCATCTTCTCGTCTGGCTGGAGGATTAGCACAGTCTTCATCAAGTTCTGGGATTTTCTACCAAGGAGAAGGGCAGTCTTCAGCTATTGTTAATTCTCACTTGAGCCAATCATTTGCAAATTCATCAAATTCAATTCCTGGAACTGGATGTTCTGATTTTGGTCCAGTTTCCGGCGACATGAATAATGCAGGTTTAAATAGCGTGGCAAATTCAGGGCCCAGTGTGGGTGTAAGTTCATTGGTTACAGATGCAAACTCTGCCCTTTCAGGGGGGCCACATTTGCAAAGGAGTGCAAGCATCAATACAGAGTCATACATGCGCTTGCCTGCATCGCCTATGTCCTTCAATTCAAATAACATTAGTGTGTCAGGTTCCTCAGTTATAGATGGATCCTGCGTAGTGCAGCAAAATTCTCAACAGGACCAAAATATCCAACACGTTCAGCAACAGGCACAGCAAGGTGCTTCACATGCCACATCATTACCAACATCACAAATAGGCCAAGAGAATAGTATAGCCTACTGGAGAAAGTTTGTAACAGAGTATTACTCTCCTCGTGCAAAGAAAAGATGGTGCTTGTCATTGTATGAGAATGTTGGACACCATGCTCTTGGTGTGATGCGTGGCAGTGTGACATCTGCGGTTCCAAATCAGGAAGGGGCTTTGAACGATCTATTTGATATTCATTGGTGCTTCGATCTTGTGAGAACTAGTGAAGCTACGTTTGAAGTACTCCCAAGACTCAGCGAGATCAAGTTTGGAAGTGGAGTTATTGACGAGCTTTTATTTCTGGACCTTCCTCAAGAAAGGAGATTTCCTTCTGGAATTATGATGTTAGAATATGGAAAAGCAATTCAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGTGAGGGTCAGCTTCGTATCATATTCACACAAGACTTGAAGATTTTGTCTTGGGAATTTTGTGCACGGCGTCATGAAGAACTTCTTCCTCGTAGGTTGGTTGCACCTCAGGTGAATCAGCTGTTACAGGTTGCCCAGAAATGCCAAAGCACAATTGCTGAAAGTGGTCCTGATGGTCTCTCTCAGAAAGATTTGCAGACAAATAGCAATATGGTACTGACAGCTGGTCGTCAGCTTGCCAAGAGTCTGGAGTTGCAGTTGCTGAATGACTTGGGTTTCTCTAAAAGATACGTGAGGTGTTTACAGATATCGGAGGTTGTCAACAGTATGAAAGATCTGATTGGTTTCTGCCGGGATCAAAAAGTTGGACCTATTGAGGGCTTGAAAAACTATCCTAGACATGCCACTGCAGCCAAGCTCCAGATGCAGAAAATGCAGGAGATGGAGCAGTTAGCAAGTATTCAAGGTCTTCCCACAGACCGCAACACAATTAATAAGCTGATGGCAATGCATCCTGAACTTGATAGCCATGGGATTAACAACCATCAAATGGTTGGTCGAGGAGGTTTGAGTGGTTCGGCACAAGCTGCTTTGGCACTGACTACATACCAGAATATTCTCATGAGACAAAACTCTATGAATTCCAACCCCAGCCCACACCAACAGGAGGCCTCATCTTCTTTCAATAATTCCAACTATAATCCATCCCCTACACTCCAGGGGACTGCATCCTTGATGCCTGGATCCATGCAGAACTCCTCTGTCGGTGGCTTTTCCAGCGTCCAGCAACCCTTGCCAAAGCAATCGCAGCAGCTGCAACAGCATCCTCCAAATGCTGGCTCCTTGGCCCAACAAAATCATCCGCAGACGATTCAGAGTAGCCAGGCCATACAACAACAGATGATCCAGCAACTACTGCAGATGTCAAGCAACAGTAAGAGTGGCGGCGCACAACAGCAACCCCTTACCGGACCAAATGCAAATAGAAGTATGGGAAGAAGAGGTATGGGTTTTGTAGGCAACACCCCAGTTGCCGCTGTGCCGTCTGGAAATCTGTCTGGGAGCAATGTCCCTGGCCCGAGTAGAAGCAATAGCTTCAAAGCTGCTTCAAATAGCGAGTCCTCAGCTGGTAACAGTGGATTCAATCAAAAGGCTTCTGATTTGCCTCAAGATCTTCATCTGCCAGAGGGTCTGGTTGACGATATAGGCCAAGATTTCCCTGAAAACGGGTTTATTAACAATGACCTTGATGAGGATTTGGGTTATGTTTGGAAGGCTTGA 2172 45.44 MASSRLAGGLAQSSSSSGIFYQGEGQSSAIVNSHLSQSFANSSNSIPGTGCSDFGPVSGDMNNAGLNSVANSGPSVGVSSLVTDANSALSGGPHLQRSASINTESYMRLPASPMSFNSNNISVSGSSVIDGSCVVQQNSQQDQNIQHVQQQAQQGASHATSLPTSQIGQENSIAYWRKFVTEYYSPRAKKRWCLSLYENVGHHALGVMRGSVTSAVPNQEGALNDLFDIHWCFDLVRTSEATFEVLPRLSEIKFGSGVIDELLFLDLPQERRFPSGIMMLEYGKAIQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQLLQVAQKCQSTIAESGPDGLSQKDLQTNSNMVLTAGRQLAKSLELQLLNDLGFSKRYVRCLQISEVVNSMKDLIGFCRDQKVGPIEGLKNYPRHATAAKLQMQKMQEMEQLASIQGLPTDRNTINKLMAMHPELDSHGINNHQMVGRGGLSGSAQAALALTTYQNILMRQNSMNSNPSPHQQEASSSFNNSNYNPSPTLQGTASLMPGSMQNSSVGGFSSVQQPLPKQSQQLQQHPPNAGSLAQQNHPQTIQSSQAIQQQMIQQLLQMSSNSKSGGAQQQPLTGPNANRSMGRRGMGFVGNTPVAAVPSGNLSGSNVPGPSRSNSFKAASNSESSAGNSGFNQKASDLPQDLHLPEGLVDDIGQDFPENGFINNDLDEDLGYVWKA 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1695857 1702362 - Maker00002798 Lcy6g0188 634632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g0188 723 PANTHER LIM DOMAIN-BINDING PROTEIN 15 169 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
Lcy6g0188 723 MobiDBLite consensus disorder prediction 643 683 - -
Lcy6g0188 723 MobiDBLite consensus disorder prediction 508 624 - -
Lcy6g0188 723 MobiDBLite consensus disorder prediction 140 165 - -
Lcy6g0188 723 MobiDBLite consensus disorder prediction 508 691 - -
Lcy6g0188 723 Pfam LIM-domain binding protein 165 426 IPR029005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1306 Lcy-Chr10:35943322 Lcy6g0188 Lcy-Chr6:1695857 4.32E-79 dispersed
Lcy6g0188 Lcy-Chr6:1695857 Lcy9g0989 Lcy-Chr9:32984450 4.37E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g0188 - - - 0.0